Alignments for a candidate for dapC in Billgrantia desiderata SP1

Align N-succinyldiaminopimelate-aminotransferase (EC 2.6.1.17) (characterized)
to candidate WP_086509348.1 BZY95_RS07615 succinyldiaminopimelate transaminase

Query= metacyc::MONOMER-6501
         (397 letters)



>NCBI__GCF_002151265.1:WP_086509348.1
          Length = 408

 Score =  369 bits (947), Expect = e-107
 Identities = 206/404 (50%), Positives = 248/404 (61%), Gaps = 13/404 (3%)

Query: 1   MNPRLDALHPYPFEKLRALLADAGKPTHDLPPINLSIGEPKHAAPACVGQAIAANLAGLS 60
           MNP LDAL PYPFEKL  L A    P   L  I L+IGEP+HA  A     + A+    +
Sbjct: 1   MNPDLDALKPYPFEKLATLKAGVTPPAQ-LAHIPLTIGEPQHAPFAGALATLHAHQLDFA 59

Query: 61  VYPSTKGEPALRQAISQWLSRRYSIPAPDPESEVLPVLGSREALFAFAQTVIDPSAGALV 120
            YP+T G P LR AI+ W  RR+ +   DPE +VLPV G+REA+FAF Q  +D S  A V
Sbjct: 60  RYPATSGIPELRGAIAAWARRRFRLDGLDPERQVLPVNGTREAIFAFVQAALDRSRPARV 119

Query: 121 VCPNPFYQIYEGAALLAGATPYYVNADPARDFGLRTGRVPDEVWRRTQLVFVCSPGNPAG 180
             PNPFYQIYEGA LLAG  P+Y++      F      VP EVWR  Q++F+CSPGNP G
Sbjct: 120 AVPNPFYQIYEGATLLAGGQPHYLDCRAESGFRPDFDAVPAEVWREVQILFLCSPGNPTG 179

Query: 181 NVMSLEEWRTLFELSDRHGFVIAAYECYSEIYLDEDTPPLGSLQAARRLGRDRYTNLVAF 240
            V    E++ L  L+D   F+IA+ ECYSE+YLDED PP G L+A   +GR  Y   + F
Sbjct: 180 AVTPRAEFQKLIALADEFDFIIASDECYSELYLDEDAPPPGLLEACAAMGRHDYRRCLVF 239

Query: 241 SSLSKRSNVPGMRSGFVAGDAALLARFLLYRTYHGSAMSPVVSAASIAAWSMRRMCRKTA 300
            SLSKRSN+PG+RSGFVAGDA L+A F  YRTYHG AMS  +  ASI AW+     R   
Sbjct: 240 HSLSKRSNLPGLRSGFVAGDAELIAPFKRYRTYHGCAMSLPLQHASITAWNDEAHVRANR 299

Query: 301 Q-YRAKFEAVLPILQNVLDVRAPQASFYLWAGTP-GSDTAFARELYGRTGVTVLPGSLLA 358
             YR KF AV  IL  VL+  AP+ASFYLW   P G D AF REL+    V+VLPGS + 
Sbjct: 300 DAYREKFAAVTEILAPVLEFPAPEASFYLWPAVPGGDDEAFTRELFAAEHVSVLPGSYMG 359

Query: 359 R----------EAHNANPGQGRIRIALVAPLDQCVQAAERIAHF 392
           R          +    NPG GRIR+ALVA L+  V+AA RI  F
Sbjct: 360 RPTTGDGRGRADGRGDNPGAGRIRLALVAELEPTVEAAGRIRRF 403


Lambda     K      H
   0.321    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 554
Number of extensions: 19
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 408
Length adjustment: 31
Effective length of query: 366
Effective length of database: 377
Effective search space:   137982
Effective search space used:   137982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate WP_086509348.1 BZY95_RS07615 (succinyldiaminopimelate transaminase)
to HMM TIGR03538 (dapC: succinyldiaminopimelate transaminase (EC 2.6.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.31619.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31619.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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