Alignments for a candidate for glk in Billgrantia desiderata SP1

Align Glucokinase (EC 2.7.1.2) (characterized)
to candidate WP_086509385.1 BZY95_RS07825 glucokinase

Query= reanno::WCS417:GFF4431
         (318 letters)



>NCBI__GCF_002151265.1:WP_086509385.1
          Length = 322

 Score =  229 bits (583), Expect = 9e-65
 Identities = 136/314 (43%), Positives = 174/314 (55%), Gaps = 6/314 (1%)

Query: 4   ALVGDIGGTNARFALWRDQELHSIRVHAT---ADHSSPEDAIKVYLKEEGLEIGDIGA-V 59
           AL+GDIGGTNARFAL    E H+ R       AD+    +A++ YL   GL   D     
Sbjct: 5   ALIGDIGGTNARFALVTPGE-HAPRESIALPCADYPGVVEAVRDYLARVGLAADDAPRQA 63

Query: 60  CLSVAGPVSGDEFKFTNNHWRLSKTAFCKTLQVDELLLVNDFSAMALGMTRLKPDEFRVV 119
           CL+ A P+ GD    TNNHW  S+      L ++ L ++NDF+A ALG+  L P+E   V
Sbjct: 64  CLAFACPIDGDRVVMTNNHWSFSRREAQTALGLERLKVINDFTAQALGVPHLAPEELVEV 123

Query: 120 CEGTPEPLRPAVVIGPGTGLGVGTLLDLGAGRFAALPGEGGHVDLPLSSPRETQLWQHIY 179
             G        +VIGPGTGLGV  +   G   +  LP EGGHV    +  RE  L +H  
Sbjct: 124 QPGVAREHATCLVIGPGTGLGVAGIFP-GRHAWIPLPTEGGHVTYAPTDEREQNLLRHFR 182

Query: 180 TEIGHVSAETALSGGGLPRLYRAICAVDGHTPVLETPEAITAAGLAGDPVAMEVLDQFSI 239
              G VS E  L G GL  LY A C++ G  P  +TP  +TAA   GD +A + L +F  
Sbjct: 183 NRYGRVSVERILCGQGLLDLYLAHCSLKGANPSCQTPPEVTAAAAGGDAIARDTLLRFLK 242

Query: 240 WLGRVAGNNVLTTGGRGGVYIVGGVIPRFADFFINSGFAKSFADKGCMSDYFKGIPVWLV 299
            LG V G+  LT G RGGVY+ GG++PR  D+   S F ++F  KG MSDY + IPV +V
Sbjct: 243 ILGDVCGDAALTMGARGGVYLCGGILPRLLDWLPQSRFVEAFTAKGRMSDYNRAIPVRVV 302

Query: 300 TAPYSGLTGAGVAL 313
           TAP+ GL GA  AL
Sbjct: 303 TAPWPGLLGAAEAL 316


Lambda     K      H
   0.320    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 290
Number of extensions: 22
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 322
Length adjustment: 28
Effective length of query: 290
Effective length of database: 294
Effective search space:    85260
Effective search space used:    85260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_086509385.1 BZY95_RS07825 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.2028.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2028.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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