Align phosphogluconate dehydratase (EC 4.2.1.12) (characterized)
to candidate WP_086509386.1 BZY95_RS07830 phosphogluconate dehydratase
Query= BRENDA::Q1PAG1
(608 letters)
>NCBI__GCF_002151265.1:WP_086509386.1
Length = 628
Score = 780 bits (2013), Expect = 0.0
Identities = 391/604 (64%), Positives = 473/604 (78%), Gaps = 6/604 (0%)
Query: 1 MHPRVLEVTERLVARSRATREAYLALIRGAASDGPQRGKLQCANFAHGVAGCG-SEDKHS 59
++ V +VTER+ RSR R+ Y A + G RG+L C N AHG AGC + DK
Sbjct: 7 LNSTVEQVTERIRERSRGRRKLYEAHMAAQHQQGVHRGELSCGNLAHGFAGCDHAGDKDR 66
Query: 60 LRMMNAANVAIVSSYNDMLSAHQPYEHFPEQIKKALREMGSVGQFAGGTPAMCDGVTQGE 119
L++ N+AN+AIVSSYNDMLSAH+P+E +PE IK+A R MGS QFAGG PAMCDGVTQG
Sbjct: 67 LKLTNSANLAIVSSYNDMLSAHRPFESYPEVIKQAARGMGSTAQFAGGVPAMCDGVTQGM 126
Query: 120 AGMELSLPSREVIALSTAVALSHNMFDAALMLGICDKIVPGLMMGALRFGHLPTIFVPGG 179
GMELSL SR+VIA++TAVALSHNMFDAAL LGICDKIVPGL +GA RFGHLP +FVPGG
Sbjct: 127 PGMELSLFSRDVIAMATAVALSHNMFDAALYLGICDKIVPGLFIGAARFGHLPAVFVPGG 186
Query: 180 PMPSGISNKEKADVRQRYAEGKATREELLESEMKSYHSPGTCTFYGTANTNQLLMEVMGL 239
PMPSG+ N EKA +RQ YAEGK REELLE+E +SYHSPGTCTFYGTAN+NQL+ME+MGL
Sbjct: 187 PMPSGLPNDEKARIRQLYAEGKVGREELLEAESRSYHSPGTCTFYGTANSNQLMMEMMGL 246
Query: 240 HLPGASFVNPYTPLRDALTHEAAQQVTRLTKQSGNFTPIGEIVDERSLVNSIVALHATGG 299
HLPGASFVNP TPLR+ALT A +Q R T+QSGN+ P +DER++VN++V L A+GG
Sbjct: 247 HLPGASFVNPGTPLREALTRYATEQAIRNTEQSGNYRPFYRQIDERAIVNAMVGLLASGG 306
Query: 300 STNHTLHMPAIAQAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMAFLIRE 359
STNHTLH+ A+A AAGI + W D DLS VP+L+ +YPNG AD+NHFQAAGGM+ LIRE
Sbjct: 307 STNHTLHLVAMAAAAGITIDWNDFNDLSAAVPSLTRIYPNGSADVNHFQAAGGMSLLIRE 366
Query: 360 LLEAGLLHEDVNTVAGRGLSRYTQEPFLDNGKLVWRDGPIESLDENILRPVARAFSPEGG 419
LL+AGL+H D+ TV G L+ YTQEPFL++GKL WR+GP ESLD ++LRPV+ F+ GG
Sbjct: 367 LLDAGLIHGDIPTVFGTDLTAYTQEPFLEDGKLTWREGPTESLDSDVLRPVSNPFAATGG 426
Query: 420 LRVMEGNLGRGVMKVSAVALQHQIVEAPAVVFQDQQDLADAFKAGELEKDFVAVMRFQGP 479
L VMEGNLGRGV+K+SAV +++VEAP +F DQ + AF++GEL++D V V+RFQGP
Sbjct: 427 LVVMEGNLGRGVIKISAVKQANRVVEAPVRIFDDQNQVKAAFESGELDRDVVVVVRFQGP 486
Query: 480 RSNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVSPEAQVGGALARVR 539
++NGMPELHK+TPFLGVLQDRG+KVALVTDGRMSGASGK+PAAIHV+PEA G LAR+R
Sbjct: 487 KANGMPELHKLTPFLGVLQDRGYKVALVTDGRMSGASGKVPAAIHVTPEAVDRGPLARLR 546
Query: 540 DGDIIRVDGVKGTLELKVDADEFAAR---EPAKGLLGNNVGSGRELFGFMRMAFSSAEQG 596
DGD++RVD +G L VDA EFA+R EP L + G GRELFG R + AEQG
Sbjct: 547 DGDVVRVDAERGELTALVDAAEFASRGIVEP--NLERYHFGMGRELFGGFRHLAAGAEQG 604
Query: 597 ASAF 600
A F
Sbjct: 605 AGVF 608
Lambda K H
0.318 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1188
Number of extensions: 51
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 628
Length adjustment: 37
Effective length of query: 571
Effective length of database: 591
Effective search space: 337461
Effective search space used: 337461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate WP_086509386.1 BZY95_RS07830 (phosphogluconate dehydratase)
to HMM TIGR01196 (edd: phosphogluconate dehydratase (EC 4.2.1.12))
../bin/blast/fastacmd -i /tmp/list.32762.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32762.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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