Alignments for a candidate for cysK in Billgrantia desiderata SP1

Align Cysteine synthase B; CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B; EC 2.5.1.47 (characterized)
to candidate WP_086510266.1 BZY95_RS12545 cysteine synthase CysM

Query= SwissProt::P16703
         (303 letters)



>NCBI__GCF_002151265.1:WP_086510266.1
          Length = 298

 Score =  395 bits (1015), Expect = e-115
 Identities = 199/293 (67%), Positives = 235/293 (80%)

Query: 3   TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
           T+E  +G+TPLV+L+R+     + +  KLEGNNPAGSVKDR ALSM+ +AE RG+I PGD
Sbjct: 5   TIEDVVGHTPLVRLKRITAGRNNTLLAKLEGNNPAGSVKDRPALSMLEQAEARGDITPGD 64

Query: 63  VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122
            LIEATSGNTGIALAM AA+KGYRM L+MPD+ S ER+ AM AYGA LI V+KE GME A
Sbjct: 65  TLIEATSGNTGIALAMAAAIKGYRMVLIMPDSASSERKQAMAAYGARLITVSKEGGMEEA 124

Query: 123 RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGV 182
           RDLA  M +RGEGK L+QF NPDNP AHY  TGPE+W+QTGG ITHFVSSMGTTGTI GV
Sbjct: 125 RDLAEAMVSRGEGKPLNQFANPDNPLAHYRGTGPELWEQTGGTITHFVSSMGTTGTIMGV 184

Query: 183 SRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMR 242
           SR+++E++  V IVGLQPE+G+SI GIRRWP EYLP IF+A+ VD VLDI Q +AE  MR
Sbjct: 185 SRYLKERNPEVQIVGLQPEDGASIAGIRRWPKEYLPSIFDATRVDRVLDIGQHEAEEHMR 244

Query: 243 ELAVREGIFCGVSSGGAVAGALRVAKANPDAVVVAIICDRGDRYLSTGVFGEE 295
            LA  EGI  GVSSGGA+AGALRVA+   +AV+V I+CDRGDRYLSTG+F  E
Sbjct: 245 RLAREEGILAGVSSGGALAGALRVAEEVENAVIVFIVCDRGDRYLSTGLFAPE 297


Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 353
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 298
Length adjustment: 27
Effective length of query: 276
Effective length of database: 271
Effective search space:    74796
Effective search space used:    74796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_086510266.1 BZY95_RS12545 (cysteine synthase CysM)
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.12585.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12585.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.