Align dihydrodipicolinate reductase; EC 1.3.1.26 (characterized)
to candidate WP_086510469.1 BZY95_RS13640 4-hydroxy-tetrahydrodipicolinate reductase
Query= CharProtDB::CH_002128 (273 letters) >NCBI__GCF_002151265.1:WP_086510469.1 Length = 267 Score = 296 bits (757), Expect = 4e-85 Identities = 158/265 (59%), Positives = 183/265 (69%), Gaps = 1/265 (0%) Query: 7 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSL 66 R+AI G GRMGR L+ A G L + GSSL G+D GELAG GK GVT SL Sbjct: 3 RIAIVGVAGRMGRTLVNAVQEDAGATLAGGIVEPGSSLAGADIGELAGLGKLGVTAVDSL 62 Query: 67 DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFA 126 DA+ DDFDV IDFT P TL +LAFC HGK MVIGTTG + + + VFA Sbjct: 63 DAIVDDFDVLIDFTAPRVTLANLAFCAAHGKRMVIGTTGLSDDELAELDGYRERLPFVFA 122 Query: 127 ANFSVGVNVMLKLLEKAAKVMGDYT-DIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKD 185 N SVGVN+ LKLLE AA+ +GD DIE+IEAHHRHKVD+PSGTAL MGE +A AL + Sbjct: 123 PNMSVGVNLTLKLLETAARALGDEGYDIEVIEAHHRHKVDSPSGTALKMGEVVAEALGRT 182 Query: 186 LKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFAN 245 LK+ V+ R G G R IGFATVRAGDIVGEHT MFA GER+EITHKASSRMTFA Sbjct: 183 LKEHGVFERVGQCGPRDSKEIGFATVRAGDIVGEHTVMFATEGERIEITHKASSRMTFAK 242 Query: 246 GAVRSALWLSGKESGLFDMRDVLDL 270 GAVR+A W++ +ESG + M+DVL L Sbjct: 243 GAVRAARWVADQESGRYGMQDVLGL 267 Lambda K H 0.319 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 263 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 267 Length adjustment: 25 Effective length of query: 248 Effective length of database: 242 Effective search space: 60016 Effective search space used: 60016 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate WP_086510469.1 BZY95_RS13640 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
../bin/blast/fastacmd -i /tmp/list.8221.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8221.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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