Alignments for a candidate for deoB in Billgrantia desiderata SP1

Align Phosphopentomutase (EC 5.4.2.7) (characterized)
to candidate WP_086510572.1 BZY95_RS14225 phosphopentomutase

Query= reanno::MR1:200397
         (404 letters)



>NCBI__GCF_002151265.1:WP_086510572.1
          Length = 412

 Score =  541 bits (1394), Expect = e-158
 Identities = 265/405 (65%), Positives = 314/405 (77%), Gaps = 1/405 (0%)

Query: 1   MKRTVIMMLDSFGVGAAGDAAKFGDVGSDTFGHIAKACAEGKAD-TGRKGPLALPNLARL 59
           M R ++++LDSFG+GAA DA +FGD G+DT GHIA AC+ G+ D   R+G LALPNL RL
Sbjct: 1   MTRAIVLVLDSFGIGAAPDAERFGDAGADTLGHIAAACSRGECDGADRQGSLALPNLGRL 60

Query: 60  GLAHAAMESTGAFAPGFADNVDLIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSE 119
           GL HA  ESTGA+A G     ++IGAYGHA E+SSGKDTPSGHWE+AGVPV F+WGYF +
Sbjct: 61  GLFHAHRESTGAWAEGVELPAEVIGAYGHAGEISSGKDTPSGHWEIAGVPVRFDWGYFLD 120

Query: 120 HQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEHMRSGKPIFYTSADSVFQIA 179
            + SFP EL   ++    L G LGNCHASGT I+  LGE+HM SGKPI YTSADSV QIA
Sbjct: 121 REESFPPELLAALIREGELPGVLGNCHASGTEIIARLGEQHMASGKPIVYTSADSVLQIA 180

Query: 180 CHEGTFGLENLYRLCEIAREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLEPPAKT 239
            HE +FGL  L+ LCE AR  LEPYNIGRVIARPF G    DF+RT NR+DYS+EPPA T
Sbjct: 181 AHEESFGLARLHALCETARRLLEPYNIGRVIARPFVGQHADDFSRTANRRDYSVEPPAPT 240

Query: 240 VLDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGENTIVFTNF 299
           VL KL   GGEV+++GKIADIYA+CG+T+ +KA+G +AL DATLA +  AGE ++V TNF
Sbjct: 241 VLQKLCDDGGEVIAIGKIADIYAHCGVTRTLKASGHDALMDATLAALDEAGERSLVMTNF 300

Query: 300 VDFDSHYGHRRDVAGYAKGLEYFDARLPEMLALLDEDDLLILTADHGCDPTWQGTDHTRE 359
           VDFD+ YGHRRDV GYA  LE FDARLPE+LA L + DLL++TADHGCDPTW GTDHTRE
Sbjct: 301 VDFDTLYGHRRDVTGYAAALEAFDARLPELLARLRDGDLLVITADHGCDPTWHGTDHTRE 360

Query: 360 YVPVLAYGAGLKAGSLGRRNSFADIGQSIASYFKLEPMEYGESFI 404
            VPVLA GAGL  GSLG R++FADIGQS+A++  L PM  G SFI
Sbjct: 361 RVPVLALGAGLAPGSLGARDTFADIGQSLAAHLGLPPMADGTSFI 405


Lambda     K      H
   0.318    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 619
Number of extensions: 25
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 412
Length adjustment: 31
Effective length of query: 373
Effective length of database: 381
Effective search space:   142113
Effective search space used:   142113
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_086510572.1 BZY95_RS14225 (phosphopentomutase)
to HMM TIGR01696 (deoB: phosphopentomutase (EC 5.4.2.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.18761.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18761.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.