Alignments for a candidate for deoC in Billgrantia desiderata SP1

Align deoxyribose-phosphate aldolase (EC 4.1.2.4) (characterized)
to candidate WP_086510574.1 BZY95_RS14235 deoxyribose-phosphate aldolase

Query= BRENDA::P0A6L0
         (259 letters)



>NCBI__GCF_002151265.1:WP_086510574.1
          Length = 257

 Score =  282 bits (721), Expect = 6e-81
 Identities = 146/258 (56%), Positives = 192/258 (74%), Gaps = 5/258 (1%)

Query: 1   MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTL 60
           MT+L+ ++ +AL LMDLT+LN+DD D  +  LC +A TP G+ AA+C+YP F+  AR+ L
Sbjct: 1   MTELQQAARQALALMDLTSLNNDDNDTVIRELCARANTPAGHPAAVCVYPAFVSTARQAL 60

Query: 61  KEQGTP-EIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGF 119
            EQG   ++++ATVTNFPHG  D++ A AETRAAIA GADEVDVVFPYRALMAG+ +VG 
Sbjct: 61  AEQGLAGKVKVATVTNFPHGEADVERAAAETRAAIAAGADEVDVVFPYRALMAGDAEVGR 120

Query: 120 DLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATP 179
           +LV+ACK  C  A  +LKVI+ETGELK+  LI +A  ++I  GADF+KTSTGKVAVNAT 
Sbjct: 121 ELVEACKRECGDA--VLKVILETGELKEAGLIDRAGMLAIDGGADFLKTSTGKVAVNATL 178

Query: 180 ESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASS 239
           ++A+I++  I+  G  + VGFK AGGVRTAEDA  YL +A+ + GA+W    H+RFGAS 
Sbjct: 179 DAAKILLTAIKASG--RDVGFKAAGGVRTAEDAAAYLQLAERVMGAEWITPAHFRFGASG 236

Query: 240 LLASLLKALGHGDGKSAS 257
           LL SLL+ LG    K ++
Sbjct: 237 LLGSLLETLGVEQDKGST 254


Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 205
Number of extensions: 8
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 257
Length adjustment: 24
Effective length of query: 235
Effective length of database: 233
Effective search space:    54755
Effective search space used:    54755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_086510574.1 BZY95_RS14235 (deoxyribose-phosphate aldolase)
to HMM TIGR00126 (deoC: deoxyribose-phosphate aldolase (EC 4.1.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.1273.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1273.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.