Alignments for a candidate for deoA in Billgrantia desiderata SP1

Align Putative thymidine phosphorylase; EC 2.4.2.4; TdRPase (uncharacterized)
to candidate WP_086510737.1 BZY95_RS15125 thymidine phosphorylase family protein

Query= curated2:Q21W90
         (522 letters)



>NCBI__GCF_002151265.1:WP_086510737.1
          Length = 530

 Score =  733 bits (1893), Expect = 0.0
 Identities = 371/509 (72%), Positives = 430/509 (84%)

Query: 14  LVLRRVAIDTYRENVAYLHRDCAVYRAEGFQALSKVEVRANGRHILATLNVVDDPNIVAC 73
           L L RVAIDTYRENVAYLHR+C +YRAEGFQALSKVEVRANG+ ILATLNVVDD  IV  
Sbjct: 22  LALCRVAIDTYRENVAYLHRECDLYRAEGFQALSKVEVRANGKRILATLNVVDDVAIVGH 81

Query: 74  NELGLSEDAFAQMAVIDGQPASVSQAEPPQSIGALRRKLAGERLGREDFLGIVRDIAELH 133
            +LGLSEDAFA + V +G P SVSQAEPP SI ALRRK+AGERL R+DF  IV+DIAEL 
Sbjct: 82  TQLGLSEDAFALLGVAEGHPVSVSQAEPPASIPALRRKIAGERLSRQDFREIVQDIAELR 141

Query: 134 YSKIELSAFVVATNRDELDREEVYFLTEAMVASGRTLNWHEPLVVDKHCIGGIPGNRSSM 193
           YSKIEL+AFVVA    ELDREEV++L++AM   GR L+WHE  VVDKHCIGGIPGNR+SM
Sbjct: 142 YSKIELTAFVVACELGELDREEVFYLSDAMGRVGRRLDWHEHPVVDKHCIGGIPGNRTSM 201

Query: 194 LVVPIVAAHGLLCPKTSSRAITSPAGTADTMEVLAKVELPVDQLADIVRTHRGCLAWGGA 253
           LVVPIVAAHGLLCPKTSSRAITSP+GTADTMEVLAKVE+P D+L ++VRTHRGC+AWGG 
Sbjct: 202 LVVPIVAAHGLLCPKTSSRAITSPSGTADTMEVLAKVEVPFDELGELVRTHRGCVAWGGT 261

Query: 254 AHLSPADDVLISVERPLAIDSPGQMVASILSKKIAAGSTHLVLDIPIGPSAKVRSMPEAQ 313
           + LSPADDVLI+VERPL+IDSPGQMVASILSKKIAAGSTHL+LDIP+GP AKVRSMPEA+
Sbjct: 262 SELSPADDVLIAVERPLSIDSPGQMVASILSKKIAAGSTHLLLDIPVGPHAKVRSMPEAR 321

Query: 314 RLRRLFEYVAGRMHLSLDVVVTDGRQPIGNGIGPVLEARDVMRVLENDPRAPNDLRQKSL 373
           RLR+LFE+VAGRM L LDVV+TDG QPIG GIGPVLEARDVMRVL N P AP DLRQKSL
Sbjct: 322 RLRKLFEFVAGRMGLVLDVVITDGSQPIGRGIGPVLEARDVMRVLTNHPDAPMDLRQKSL 381

Query: 374 RLAGRLIEFDPDVRGGDGFAIARDILDSGRALAKMNAIIAAQGAKPFDHNHPQLGALTFD 433
           RLAGR++EFDPD+RGGDGF IARDILDSGRAL KM AII AQG KPFD + P+L    F+
Sbjct: 382 RLAGRMLEFDPDIRGGDGFGIARDILDSGRALEKMQAIIRAQGEKPFDLDDPELAPHRFE 441

Query: 434 ICASESGVVTGIDNLQVARIARLAGAPKVIGAGIDLFHKLGEAVTSGEVLYRVHAGFQSD 493
           + A ++GVVT IDNL++ARIARLAGAPK  GAG+DL  ++G+ V  G+ LYRVHA ++S+
Sbjct: 442 VLAPQAGVVTAIDNLRLARIARLAGAPKARGAGVDLLARIGDRVEQGQPLYRVHAAYRSE 501

Query: 494 LDFARQACAKSTGYTLGRAEDVPHVFTEF 522
             FA Q   + +G+ +G+ +++  +  EF
Sbjct: 502 HGFALQCSERDSGFDIGQPDEIQRLNVEF 530


Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 944
Number of extensions: 38
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 530
Length adjustment: 35
Effective length of query: 487
Effective length of database: 495
Effective search space:   241065
Effective search space used:   241065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_086510737.1 BZY95_RS15125 (thymidine phosphorylase family protein)
to HMM TIGR02645 (putative thymidine phosphorylase (EC 2.4.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.19663.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19663.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.