Alignments for a candidate for lpd in Billgrantia desiderata SP1

Align Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of 2-oxoglutarate dehydrogenase complex; EC 1.8.1.4 (characterized)
to candidate WP_086510769.1 BZY95_RS15335 dihydrolipoyl dehydrogenase

Query= SwissProt::P14218
         (478 letters)



>NCBI__GCF_002151265.1:WP_086510769.1
          Length = 478

 Score =  639 bits (1648), Expect = 0.0
 Identities = 316/478 (66%), Positives = 388/478 (81%)

Query: 1   MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKAL 60
           M+ KFDV+VIGAGPGGYVAAIRAAQLGLKTAC+EK++ KEGK   GGTCLNVGCIPSKAL
Sbjct: 1   MADKFDVIVIGAGPGGYVAAIRAAQLGLKTACVEKWVNKEGKTVHGGTCLNVGCIPSKAL 60

Query: 61  LDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEG 120
           L++S+K+ EA++ F   GI+ +    +V  M+  K +++    GGI+ LFKANGVT+ +G
Sbjct: 61  LETSHKFVEARDHFAEIGIDLEPPKANVAKMLEFKNSVIAKNVGGISALFKANGVTAIDG 120

Query: 121 HGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAV 180
            GK++A KQVEVT  DG     EA+N++IA+GS PVEIPP PL +DI+V STGALEF  V
Sbjct: 121 TGKVVAAKQVEVTDHDGGKTTYEADNIVIAAGSVPVEIPPTPLHEDIVVTSTGALEFTEV 180

Query: 181 PKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIR 240
           PK+LGVIGAGVIGLELGSVW+RLGAEVTVLEA+D FLP  D  IAKE  K+L KQGL+I+
Sbjct: 181 PKRLGVIGAGVIGLELGSVWSRLGAEVTVLEAMDTFLPMVDTAIAKETQKLLKKQGLDIK 240

Query: 241 LGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDERGF 300
           LGARVT SEVK  +VTV ++D NGEQ++TFDKLIV VGRRP T  ++  + GV LDERGF
Sbjct: 241 LGARVTGSEVKGNEVTVKYSDGNGEQEQTFDKLIVCVGRRPYTKGVVDENVGVGLDERGF 300

Query: 301 IYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYDLIPSVIYTH 360
           I+VDD C+TSVPG++AIGD VRG MLAHKASEEGVMVA+ IAGHKA+MNYD IPSVIYT 
Sbjct: 301 IHVDDQCRTSVPGIYAIGDCVRGPMLAHKASEEGVMVADIIAGHKAEMNYDAIPSVIYTS 360

Query: 361 PEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIADAKTDRVLGVHVI 420
           PE+AWVG  EQ  KA+G++V  G+FPF+A+GRA+A N   G+ KVIADA+TDR+LG+H++
Sbjct: 361 PEVAWVGMNEQEAKAKGIKVKTGSFPFSANGRALANNAPEGMAKVIADAETDRILGMHIV 420

Query: 421 GPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGHAIHIANRKKR 478
              A EL+ QG I MEFG+SAEDL +  ++HP+ SEA+HEAALAV+GHAIH+ANRKKR
Sbjct: 421 SQHAGELIAQGVIAMEFGSSAEDLALTCYAHPSTSEAIHEAALAVDGHAIHMANRKKR 478


Lambda     K      H
   0.316    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 790
Number of extensions: 35
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 478
Length adjustment: 34
Effective length of query: 444
Effective length of database: 444
Effective search space:   197136
Effective search space used:   197136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_086510769.1 BZY95_RS15335 (dihydrolipoyl dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.14005.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14005.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.