Align 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized)
to candidate WP_086510803.1 BZY95_RS15480 4-aminobutyrate--2-oxoglutarate transaminase
Query= SwissProt::P22256
(426 letters)
>NCBI__GCF_002151265.1:WP_086510803.1
Length = 430
Score = 429 bits (1103), Expect = e-125
Identities = 211/421 (50%), Positives = 281/421 (66%)
Query: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
+N +L + + + + G FADRAEN +WD +G +DFAGGI VLN GH HPKV
Sbjct: 2 NNAQLNELKQRYVANGAASPATQFADRAENALIWDADGNRIIDFAGGIGVLNIGHRHPKV 61
Query: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
V AV+AQL K+ HTC V+ YE Y+++ E ++Q P K +L +G+EA+ENAVKIA
Sbjct: 62 VEAVKAQLDKVMHTCQTVMPYEGYVKVAEKLSQVTPVRGHAKVMLANSGAEALENAVKIA 121
Query: 123 RAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDD 182
RAAT ++ I F G YHGRT T+A+ GKV PY++ G MPG+V+RA YP P HG+SED+
Sbjct: 122 RAATGKNNVICFDGGYHGRTFMTMAMNGKVAPYASDFGTMPGNVFRAPYPVPYHGVSEDE 181
Query: 183 AIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQ 242
AI + K DA P D AAIV+EPV GEGGFY + +F++ +R +CDEHG+++I DEVQ
Sbjct: 182 AIRGLKMAIKTDANPRDTAAIVLEPVLGEGGFYPAPASFLKAIREICDEHGMLMIVDEVQ 241
Query: 243 SGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNP 302
SG GRTG LFA+E GV PD+ T AKS+A G P++ V G +VMDA P LGGTY GNP
Sbjct: 242 SGFGRTGKLFAIEHSGVEPDIITMAKSMADGMPISAVVGTDKVMDASGPNSLGGTYTGNP 301
Query: 303 IACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFED 362
++C A L VL VFE+EN+L+K+ LG KL + + R +GAM A++L D
Sbjct: 302 LSCAATLAVLDVFEEENILEKSMALGDKLAKRFAQWQRDFDCVDNARNMGAMAALDLVTD 361
Query: 363 GDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422
+ PDA L A + +AR+KGLILLSCG Y N +R L+P+TIED + +GL+I+
Sbjct: 362 KAKHTPDADLAAALCKKAREKGLILLSCGLYGNTIRFLMPVTIEDEILEEGLDIVEAALT 421
Query: 423 E 423
E
Sbjct: 422 E 422
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 510
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 430
Length adjustment: 32
Effective length of query: 394
Effective length of database: 398
Effective search space: 156812
Effective search space used: 156812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)
Align candidate WP_086510803.1 BZY95_RS15480 (4-aminobutyrate--2-oxoglutarate transaminase)
to HMM TIGR00700 (gabT: 4-aminobutyrate transaminase (EC 2.6.1.19))
../bin/blast/fastacmd -i /tmp/list.29676.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29676.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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