Alignments for a candidate for argE in Billgrantia desiderata SP1

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_086511020.1 BZY95_RS16665 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_002151265.1:WP_086511020.1
          Length = 383

 Score =  275 bits (704), Expect = 1e-78
 Identities = 160/385 (41%), Positives = 221/385 (57%), Gaps = 19/385 (4%)

Query: 1   MQAAEILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKE 60
           M AAE+L +LVGF +V    N D+++++ GYL+ HG+    +   +G ++N+ A IGP  
Sbjct: 1   MTAAEMLERLVGFATVSRDSNLDLIAFVEGYLDEHGVKHWRVESDDGRKANLLARIGPDV 60

Query: 61  ARGYIISGHMDVVPAAETGWTSDPFRLRVEAD-RLYGRGTTDMKGFLAAVLAAVPKLAAM 119
             G ++SGH DVVP     W++DPF L  + D +LYGRGT DMKGF+A  LA +P+    
Sbjct: 61  EGGVVLSGHTDVVPVDGQPWSTDPFTLIDKGDGKLYGRGTCDMKGFIACALAELPEWLKR 120

Query: 120 PLRRPLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARL 179
            L +P++LALSYDEE GC G P MI RL     +P   I+GEPT M+ + AHKG    R 
Sbjct: 121 GLDKPIYLALSYDEEVGCIGAPRMIERLMADHPRPTAVIVGEPTLMQPVVAHKGATNLRT 180

Query: 180 TVRGRSGHSSRPDQGLNAIHGVAGVLTQAVAEADRL-VGGPFEHVFEPPYSSLQIGTVKG 238
           TV GR+ HSS+ DQG++AIH  A ++T+       L   G  +  F   +SSL +G + G
Sbjct: 181 TVTGRASHSSQVDQGVSAIHVAARLVTKIEDVMSELRAEGRVDEAFNVAHSSLHVGKIAG 240

Query: 239 GQAVNIIPDSCEVEFEARAISGVDPAELLAPVRKTAEALTTLGFEVEWQELS-------- 290
           G A+NI+   C  E+E R +      EL   V   A  L     E E Q  +        
Sbjct: 241 GTAINIMARECTFEWEIRHLPSDRFEELFERVNAFAAEL-----EAEMQRRAPETSIVTE 295

Query: 291 ----AYPALSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRA 346
                 PAL+ + +A +  L  EL G +   AV+Y TEAG FQR G+  +ICGPG I +A
Sbjct: 296 ALNLTVPALADDNNAEVLDLCRELLGEQPSGAVAYATEAGQFQRVGLPTVICGPGSIRQA 355

Query: 347 HKPDEYILIDELMACRAMVEALGAR 371
           H+PDEYI I++L A    ++ALG R
Sbjct: 356 HQPDEYIEIEQLAAGTRFMQALGRR 380


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 395
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 383
Length adjustment: 30
Effective length of query: 344
Effective length of database: 353
Effective search space:   121432
Effective search space used:   121432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_086511020.1 BZY95_RS16665 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.9486.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9486.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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