Align Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 (characterized)
to candidate WP_086511660.1 BZY95_RS20065 Fe/S-dependent 2-methylisocitrate dehydratase AcnD
Query= SwissProt::Q937N8 (869 letters) >NCBI__GCF_002151265.1:WP_086511660.1 Length = 869 Score = 1401 bits (3627), Expect = 0.0 Identities = 700/866 (80%), Positives = 764/866 (88%), Gaps = 3/866 (0%) Query: 1 MNSANRKPLPGTKLDYFDARAAVEAIQPGAYDKLPYTSRVLAENLVRRCDPATLTDSLLQ 60 MN+ RKPLPGT+LDYFD R AVE IQPGAYD LPYTSRVLAE LVRRC+P LTD+L Q Sbjct: 1 MNTQYRKPLPGTELDYFDVREAVEEIQPGAYDTLPYTSRVLAEQLVRRCEPELLTDALKQ 60 Query: 61 LVGRKRDLDFPWFPARVVCHDILGQTALVDLAGLRDAIADQGGDPAKVNPVVPVQLIVDH 120 L+ R+RDLDFPW+PARVVCHDILGQTALVDLAGLRDAIA++GGDP+KVNPVVP QLIVDH Sbjct: 61 LIERRRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPSKVNPVVPTQLIVDH 120 Query: 121 SLAVECGGFDPDAFAKNRAIEDRRNEDRFHFIDWTKQAFKNVDVIPPGNGIMHQINLEKM 180 SLAVECGG DPDAFAKNRAIEDRRNEDRFHFIDWT+ AFKNVDVIP GNGIMHQINLEKM Sbjct: 121 SLAVECGGDDPDAFAKNRAIEDRRNEDRFHFIDWTRTAFKNVDVIPAGNGIMHQINLEKM 180 Query: 181 SPVIHADNGVAYPDTCVGTDSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRLPDIVGV 240 SPVI A +GVAYPDTCVGTDSHTPH+D LGVIAIGVGGLEAE VMLGR S MRLPDIVGV Sbjct: 181 SPVIQARDGVAYPDTCVGTDSHTPHIDCLGVIAIGVGGLEAETVMLGRPSMMRLPDIVGV 240 Query: 241 ELTGKRQPGITATDIVLALTEFLRKEKVVGAYLEFRGEGASSLTLGDRATISNMAPEYGA 300 ELTGKRQ GITATDIVLA+TEFLR+E+VVGAYLEF GEGA SLT+GDRATISNM PEYGA Sbjct: 241 ELTGKRQSGITATDIVLAITEFLRQERVVGAYLEFFGEGADSLTIGDRATISNMTPEYGA 300 Query: 301 TAAMFFIDEQTIDYLRLTGRTDEQLKLVETYARTAGLWADSLKNAEYERVLKFDLSSVVR 360 TAAMF+ID+QT+DYL +TGR EQ+ LVE YA+T GLWADSLKN +YERVL FDLS+V R Sbjct: 301 TAAMFYIDQQTLDYLAITGREPEQVALVENYAKTVGLWADSLKNVQYERVLTFDLSTVER 360 Query: 361 NMAGPSNPHKRLPTSALAERGIAVDLDKASAQEAEGLMPDGAVIIAAITSCTNTSNPRNV 420 N+AGPSNPH+RLPTSALAERGIAV+L+ A A+E G MPDGAVIIAAITSCTNTSNPRNV Sbjct: 361 NLAGPSNPHRRLPTSALAERGIAVNLELALAEEKAGRMPDGAVIIAAITSCTNTSNPRNV 420 Query: 421 IAAALLARNANARGLARKPWVKSSLAPGSKAVELYLEEANLLPDLEKLGFGIVAFACTTC 480 +AA LLA+ AN GL RKPWVKSS APGSK LYLEEA LLP+LEKLGFGIVA+ACTTC Sbjct: 421 VAAGLLAKKANELGLVRKPWVKSSFAPGSKVARLYLEEAGLLPELEKLGFGIVAYACTTC 480 Query: 481 NGMSGALDPKIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTI 540 NGMSGAL P+IQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGT+ Sbjct: 481 NGMSGALRPEIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTV 540 Query: 541 RFDIEKDVLGTDQDGKPVYLKDIWPSDEEIDAIVAKSVKPEQFRKVYEPMFAITAASGES 600 RFDIEKD LG D+ G PV LKD+WPSDEEIDAIV + VKPEQF++VY PMF + ++ Sbjct: 541 RFDIEKDALGYDKAGNPVTLKDLWPSDEEIDAIVGEYVKPEQFKQVYIPMFNLDEVE-QA 599 Query: 601 VSPLYDWRPQSTYIRRPPYWEGALAGERTLKALRPLAVLGDNITTDHLSPSNAIMLNSAA 660 SPLYDWRPQSTYIRRPPYWEG +A ER LK +RPLA+L DNITTDHLSPSNAI+L+SAA Sbjct: 600 KSPLYDWRPQSTYIRRPPYWEGNMARERGLKGMRPLAILPDNITTDHLSPSNAILLDSAA 659 Query: 661 GEYLARMGLPEEDFNSYATHRGDHLTAQRATFANPTLINEMAVVD-GQVKKGSLARIEPE 719 GEYLA+MGLPEEDFNSYATHRGDHLTAQRAT ANP L NEM + G+V +GSLARIEPE Sbjct: 660 GEYLAKMGLPEEDFNSYATHRGDHLTAQRATLANPKLFNEMVRDEKGEVIQGSLARIEPE 719 Query: 720 GKVVRMWEAIETYMDRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEVIVAEGFERIHRT 779 GKV RMWEAIETYM+R QPLI+IAGADYGQGSSRDWAAKGV LAGVE IVAEGFERIHRT Sbjct: 720 GKVTRMWEAIETYMERGQPLIVIAGADYGQGSSRDWAAKGVALAGVEAIVAEGFERIHRT 779 Query: 780 NLIGMGVLPLEFKPGVNRLTLGLDGTETYDVIGERQPRATLTLVVNRKNGERVEVPVTCR 839 NL+GMGV+PL+F+ G R TL LDGTETYDV G+ P ATLTLV++R G VPV CR Sbjct: 780 NLVGMGVMPLQFQEGTTRHTLKLDGTETYDVEGKPAPGATLTLVIHRAGGNSERVPVLCR 839 Query: 840 LDSDEEVSIYEAGGVL-HFAQDFLES 864 LD+ EEVS+Y AGGVL FAQDFLES Sbjct: 840 LDTAEEVSVYSAGGVLQRFAQDFLES 865 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 2179 Number of extensions: 80 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 869 Length of database: 869 Length adjustment: 42 Effective length of query: 827 Effective length of database: 827 Effective search space: 683929 Effective search space used: 683929 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.2 bits)
Align candidate WP_086511660.1 BZY95_RS20065 (Fe/S-dependent 2-methylisocitrate dehydratase AcnD)
to HMM TIGR02333 (acnD: 2-methylisocitrate dehydratase, Fe/S-dependent (EC 4.2.1.99))
../bin/blast/fastacmd -i /tmp/list.24389.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24389.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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