Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate WP_086511731.1 BZY95_RS20455 diaminopimelate decarboxylase
Query= BRENDA::Q9KVL7 (417 letters) >NCBI__GCF_002151265.1:WP_086511731.1 Length = 430 Score = 563 bits (1452), Expect = e-165 Identities = 285/420 (67%), Positives = 340/420 (80%), Gaps = 5/420 (1%) Query: 1 MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAV 60 MD+F Y+ DG L+ E+VPL +A++ GTP YVYSRATL RH+ A+ +++G +PHLICYAV Sbjct: 1 MDHFEYR-DGVLYGEEVPLTQVADEIGTPCYVYSRATLTRHYRAYTEALGSHPHLICYAV 59 Query: 61 KANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKI 120 KANSNL VLN LARLG+GFDIVS+GELERVLAAGGDP+KVVFSGV K E EM RAL++ I Sbjct: 60 KANSNLAVLNLLARLGAGFDIVSLGELERVLAAGGDPAKVVFSGVAKQEHEMARALEVGI 119 Query: 121 KCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAA 180 KCFNVES PEL+RL+ VA LG AP+SLR+NPDVDA THPYISTGL+DNKFGI A Sbjct: 120 KCFNVESRPELERLSAVAERLGKVAPVSLRVNPDVDAGTHPYISTGLKDNKFGIAVGEAL 179 Query: 181 QVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGG 240 +VY LA LP L V GIDCHIGSQLT LAPF+DA DRLL L++ L GI + HLD+GGG Sbjct: 180 EVYELAARLPGLKVVGIDCHIGSQLTELAPFLDALDRLLVLLERLHERGISVEHLDLGGG 239 Query: 241 LGVVYRDELPPQPSEYAKALLDRLERHR---DLELIFEPGRAIAANAGVLVTKVEFLKHT 297 LGV YR E PPQP +YA +LL+RL + + +L L+FEPGR+IAANAGVL+T+VEFLK Sbjct: 240 LGVPYRGERPPQPFDYAASLLERLAQWKHGENLTLLFEPGRSIAANAGVLLTRVEFLKPG 299 Query: 298 EHKNFAIIDAAMNDLIRPALYQAWQDIIPLRPRQ-GEAQTYDLVGPVCETSDFLGKDRDL 356 E KNFAI+DA MNDLIRP+LYQAWQ IIP+ R E+ YD+VGPVCET DFLGK+R+L Sbjct: 300 ETKNFAIVDAGMNDLIRPSLYQAWQAIIPVDTRHVRESAVYDVVGPVCETGDFLGKEREL 359 Query: 357 VLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREELSSLWALESVLP 416 + GDLLAVRS+GAYGF M+SNYN+RPR AEVMVDG+ ++VRQRE + SLWA ES+LP Sbjct: 360 AIGAGDLLAVRSAGAYGFVMASNYNSRPRPAEVMVDGDAYHVVRQRESVESLWAGESLLP 419 Lambda K H 0.319 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 572 Number of extensions: 26 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 417 Length of database: 430 Length adjustment: 32 Effective length of query: 385 Effective length of database: 398 Effective search space: 153230 Effective search space used: 153230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate WP_086511731.1 BZY95_RS20455 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))
../bin/blast/fastacmd -i /tmp/list.3886.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3886.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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