Alignments for a candidate for fadA in Billgrantia desiderata SP1

Align subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) (characterized)
to candidate WP_086511957.1 BZY95_RS21635 3-oxoadipyl-CoA thiolase

Query= metacyc::MONOMER-3207
         (400 letters)



>NCBI__GCF_002151265.1:WP_086511957.1
          Length = 400

 Score =  532 bits (1371), Expect = e-156
 Identities = 273/400 (68%), Positives = 322/400 (80%), Gaps = 2/400 (0%)

Query: 1   MRDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCANQA 60
           M  V++C   R+ +GRFGG LA VR DDLAA  +KA++   P +    ++EVF GCANQA
Sbjct: 1   MNSVYLCHPQRSAVGRFGGTLASVRPDDLAAAIVKAVLAQAPDLDPSAIEEVFMGCANQA 60

Query: 61  GEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESM 120
           GEDNRNVARMA LLAGLP SIPG TLNRLC SGMDA+GTAFRAI +GEMELA+AGGVESM
Sbjct: 61  GEDNRNVARMASLLAGLPVSIPGTTLNRLCGSGMDAVGTAFRAIKAGEMELALAGGVESM 120

Query: 121 SRAPFVMGKAESGYSRNMKLEDTTIGWRFINPLMKSQYGVDSMPETADNVADDYQVSRAD 180
           SRAP+VMGKA+S +SR  K+EDTTIGWRFINPLMK  YGV+SMPETA+NVA+ + +SR D
Sbjct: 121 SRAPYVMGKADSAFSRGQKIEDTTIGWRFINPLMKKAYGVESMPETAENVAEQFAISRED 180

Query: 181 QDAFALRSQQKAAAAQAAGFFAEEIVPVRIAHKKGETI-VERDEHLRPETTLEALTKLKP 239
           QDAFALRSQQKAAAAQ AG FA EI  + I  +K E +  ++DEHLR  TTLE L  L  
Sbjct: 181 QDAFALRSQQKAAAAQEAGRFACEITAIEIPRRKQEPLRFDQDEHLR-ATTLEKLAGLPA 239

Query: 240 VNGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRARVLGMASGGVAPRVMGIGPV 299
                 +VTAGNASGVNDGAAA+++AS +AV+KHGLTP A++LGMA+ GV PR+MGIGPV
Sbjct: 240 PFREGGSVTAGNASGVNDGAAAMLVASRQAVEKHGLTPMAKILGMATAGVEPRIMGIGPV 299

Query: 300 PAVRKLTERLGVAVSDFDVIELNEAFASQGLAVLRELGVADDAPQVNPNGGAIALGHPLG 359
           PAVRKL  R GV++ + DVIELNEAFA+Q LA +RELG+AD  P+VNPNGGAIALGHPLG
Sbjct: 300 PAVRKLLARTGVSLDEIDVIELNEAFAAQALAGMRELGIADGDPRVNPNGGAIALGHPLG 359

Query: 360 MSGARLVLTALHQLEKSGGRKGLATMCVGVGQGLALAIER 399
           MSGARL+LTA H+L+KSG R  L TMCVGVGQG+A  +ER
Sbjct: 360 MSGARLLLTAAHELQKSGKRYALCTMCVGVGQGIATLLER 399


Lambda     K      H
   0.318    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 506
Number of extensions: 18
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 400
Length adjustment: 31
Effective length of query: 369
Effective length of database: 369
Effective search space:   136161
Effective search space used:   136161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_086511957.1 BZY95_RS21635 (3-oxoadipyl-CoA thiolase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.26035.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26035.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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