Alignments for a candidate for paaJ2 in Billgrantia desiderata SP1

Align Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (characterized)
to candidate WP_086511957.1 BZY95_RS21635 3-oxoadipyl-CoA thiolase

Query= reanno::Marino:GFF2751
         (415 letters)



>NCBI__GCF_002151265.1:WP_086511957.1
          Length = 400

 Score =  535 bits (1379), Expect = e-157
 Identities = 268/404 (66%), Positives = 324/404 (80%), Gaps = 5/404 (1%)

Query: 7   LKDAYIVDAIRTPIGRYGGALSAVRADDLGAIPIKALAERYPDLDWSKIDDVLYGCANQA 66
           +   Y+    R+ +GR+GG L++VR DDL A  +KA+  + PDLD S I++V  GCANQA
Sbjct: 1   MNSVYLCHPQRSAVGRFGGTLASVRPDDLAAAIVKAVLAQAPDLDPSAIEEVFMGCANQA 60

Query: 67  GEDNRDVARMSLLLAGLPVDVPGSTINRLCGSGMDAVGSAARAIRTGETQLMIAGGVESM 126
           GEDNR+VARM+ LLAGLPV +PG+T+NRLCGSGMDAVG+A RAI+ GE +L +AGGVESM
Sbjct: 61  GEDNRNVARMASLLAGLPVSIPGTTLNRLCGSGMDAVGTAFRAIKAGEMELALAGGVESM 120

Query: 127 SRAPFVMGKADSAFSRKAEIFDTTIGWRFVNPVLKKQYGIDSMPETAENVAADFGISRED 186
           SRAP+VMGKADSAFSR  +I DTTIGWRF+NP++KK YG++SMPETAENVA  F ISRED
Sbjct: 121 SRAPYVMGKADSAFSRGQKIEDTTIGWRFINPLMKKAYGVESMPETAENVAEQFAISRED 180

Query: 187 QDAFALRSQQRTAAAQKEGRLAAEITPVTIPRRKQDPLVVDTDEHPRETSLEKLASLPTP 246
           QDAFALRSQQ+ AAAQ+ GR A EIT + IPRRKQ+PL  D DEH R T+LEKLA LP P
Sbjct: 181 QDAFALRSQQKAAAAQEAGRFACEITAIEIPRRKQEPLRFDQDEHLRATTLEKLAGLPAP 240

Query: 247 FRENGTVTAGNASGVNDGACALLLAGADALKQYNLKPRARVVAMATAGVEPRIMGFGPAP 306
           FRE G+VTAGNASGVNDGA A+L+A   A++++ L P A+++ MATAGVEPRIMG GP P
Sbjct: 241 FREGGSVTAGNASGVNDGAAAMLVASRQAVEKHGLTPMAKILGMATAGVEPRIMGIGPVP 300

Query: 307 ATRKVLATAGLELADMDVIELNEAFAAQALAVTRDLGLPDDAEHVNPNGGAIALGHPLGM 366
           A RK+LA  G+ L ++DVIELNEAFAAQALA  R+LG+ D    VNPNGGAIALGHPLGM
Sbjct: 301 AVRKLLARTGVSLDEIDVIELNEAFAAQALAGMRELGIADGDPRVNPNGGAIALGHPLGM 360

Query: 367 SGARLVTTALNELERRHAAGQKARYALCTMCIGVGQGIALIIER 410
           SGARL+ TA +EL++        RYALCTMC+GVGQGIA ++ER
Sbjct: 361 SGARLLLTAAHELQK-----SGKRYALCTMCVGVGQGIATLLER 399


Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 534
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 400
Length adjustment: 31
Effective length of query: 384
Effective length of database: 369
Effective search space:   141696
Effective search space used:   141696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_086511957.1 BZY95_RS21635 (3-oxoadipyl-CoA thiolase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))

Software error:

../bin/blast/fastacmd -i /tmp/list.5808.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5808.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.