GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Billgrantia desiderata SP1

Align Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 (characterized)
to candidate WP_086512002.1 BZY95_RS21875 phosphate acetyltransferase

Query= SwissProt::Q9I5A5
         (704 letters)



>NCBI__GCF_002151265.1:WP_086512002.1
          Length = 724

 Score =  806 bits (2082), Expect = 0.0
 Identities = 428/707 (60%), Positives = 523/707 (73%), Gaps = 15/707 (2%)

Query: 6   IAPTGFGVGLTSISLGLLRALERAGLKVGFFKPIAQLHPGDLGPERSSELVARTHGLDTP 65
           + PTG GVGLTS  LGL++AL+  GLK GF KP  Q      GP+RS+ LV  T G+  P
Sbjct: 15  MVPTGVGVGLTSACLGLMQALDTIGLKAGFLKPFRQDELNGPGPDRSTALVGSTLGMRPP 74

Query: 66  KPLPLAQVERMLGDGQLDELLEEIISLYQRA-----AADKDVVIVEGMVPTRHASYAARV 120
            P+P A +ER+L   +LD L+E++I L+ +A         D+++VEG+VPT H +YA ++
Sbjct: 75  APIPQADMERLLRQDRLDVLMEQVIELFDQAMDGHDGTTPDLIVVEGVVPTAHGTYATQL 134

Query: 121 NFHLAKSLDAEVILVSAPENETLTELTDRIEIQAQLFGGPRDPKVLGVILNKVRG----- 175
           N  LA +L+A VILV + +      L +++++ A  FGG    + LG IL +++      
Sbjct: 135 NAQLAHALNARVILVGSGDAAAPEALAEQLDMHASAFGGVGSARTLGCILMRMQNLPGGE 194

Query: 176 EADAANAEDGVA---DFARRLTEHSPLLRDD-FRLIGCIPWQDELNAARTRDIADLLSAR 231
           E   A     V     F   L  HSP L  D F LIG +P+   L A R  D+A  L AR
Sbjct: 195 EPTLAPGTSSVMLDDTFLDELRRHSPALATDRFHLIGVVPYNPALIAPRVVDVARALDAR 254

Query: 232 VINAGDYEQRRVQKIVLCARAVPNTVQLLKPGVLVVTPGDRDDIILAASLAAMNGVPLAG 291
            ++ GD   RRV    LCAR+  N + + +PG L+VT GDRDDI+LA++LA MNGVP+AG
Sbjct: 255 FLHEGDAANRRVLSTSLCARSAANALHVFRPGSLIVTSGDRDDIVLASALATMNGVPMAG 314

Query: 292 LLLCSDFPPDPRIMELCRGALQGGLPVLSVATGSYDTATNLNRMNKEIPVDDRERAERVT 351
           +LL + F P+  ++E+CR AL+ G+PVL+V T S+ TA NL RM  +IP+DD ERAE+VT
Sbjct: 315 VLLTNGFMPNDNMIEMCRPALKTGMPVLAVDTDSFTTAKNLGRMGNDIPMDDLERAEQVT 374

Query: 352 EFVAGHIDFEWLKQRCGTPRELRLSPPAFRYQVVQRAQKAGKRIVLPEGSEPRTVQAAAI 411
            FVAGH+D +WLK         RLSP AFR+Q+V+ AQ+A +RI+LPEGSEPRTV+AAAI
Sbjct: 375 RFVAGHLDLQWLKDHLSRGFTRRLSPSAFRHQLVKLAQRANRRIILPEGSEPRTVEAAAI 434

Query: 412 CQARGIARCVLLAKPEEVQAVAQAQGIVLPEGLEIIDPDLVRQRYVEPMVELRKGKGLNA 471
           CQ RGIA CVLLA+ EEV+ VA+ +GI LPEGLEI+DP+ +R RYV PMVE R+GK +N 
Sbjct: 435 CQRRGIANCVLLARREEVEEVARNRGIELPEGLEILDPEHIRSRYVAPMVERRRGK-VNE 493

Query: 472 PMAEQQLEDSVVLATMMLALDEVDGLVSGAIHTTASTIRPALQLIKTAPGYNLVSSVFFM 531
             AE QL+D+VVL TMML LDEVDGLVSGAIHTTA+T+RPA QLIKTAPGY  VSS+FFM
Sbjct: 494 LTAEDQLQDNVVLGTMMLQLDEVDGLVSGAIHTTANTVRPAFQLIKTAPGYRQVSSIFFM 553

Query: 532 LLPDQVLVYGDCAVNPDPSASDLAEIAVQSAASAQAFGIPARVAMISYSTGDSGSGVDVD 591
           LLP+QV+VYGDCAVNPDP A  LAEIA+QSA SAQAFGI  RVAMISYSTG+SGSG DVD
Sbjct: 554 LLPEQVVVYGDCAVNPDPDAEALAEIAIQSARSAQAFGIEPRVAMISYSTGESGSGADVD 613

Query: 592 KVREATRLAREQRPDLLIDGPLQYDAAAIASVGRQKAPNSPVAGQATVFIFPDLNTGNTT 651
           KVR+ATRLAREQ PDLLIDGPLQYDAAAI SVGRQKAP+SPVAG+ATVF+FPDLNTGNTT
Sbjct: 614 KVRQATRLAREQAPDLLIDGPLQYDAAAIESVGRQKAPDSPVAGRATVFVFPDLNTGNTT 673

Query: 652 YKAVQRSADCVSVGPMLQGLRKPVNDLSRGALVEDIVYTIALTAIQA 698
           YKAVQRSA  VSVGPMLQGL KPVNDLSRGALV+DIVYTIALTAIQA
Sbjct: 674 YKAVQRSARVVSVGPMLQGLNKPVNDLSRGALVDDIVYTIALTAIQA 720


Lambda     K      H
   0.319    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1360
Number of extensions: 55
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 724
Length adjustment: 39
Effective length of query: 665
Effective length of database: 685
Effective search space:   455525
Effective search space used:   455525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Align candidate WP_086512002.1 BZY95_RS21875 (phosphate acetyltransferase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.11495.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11495.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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