Alignments for a candidate for ackA in Billgrantia desiderata SP1

Align acetate kinase (EC 2.7.2.1) (characterized)
to candidate WP_086512003.1 BZY95_RS21880 acetate kinase

Query= BRENDA::E3W769
         (401 letters)



>NCBI__GCF_002151265.1:WP_086512003.1
          Length = 392

 Score =  370 bits (949), Expect = e-107
 Identities = 196/388 (50%), Positives = 264/388 (68%), Gaps = 10/388 (2%)

Query: 6   VLVLNCGSSSLKFAIIDAQSGDDKISGLAECFGLEDSRIKWKFNGGKNEAKLGAFTAHRE 65
           VLV+NCGSSS+K+A++       ++SGLAE  G  D+R+K   + G++  +  A   H  
Sbjct: 5   VLVINCGSSSIKYALVPKDPSRPRLSGLAERLGNGDARLKGTDSHGESFEQALAGADHAR 64

Query: 66  AVEFFIVNNILAEHPELAAQIKAIGHRIVHGGEKFTRSVIITPEVIQGIEDCASLAPLHN 125
           A+E  I+  +    P       A+GHRIVHGGE+FTR+ +I  EV+  IE  A+LAPLHN
Sbjct: 65  ALEA-ILERLEGRLPV------AVGHRIVHGGERFTRAALIDDEVVAAIEQTAALAPLHN 117

Query: 126 PAHLIGIRAAIASFPQLPQVTVFDTAFHQTMPEKAYIYALPYKLYREHSIRRYGMHGTSH 185
           PA+L G+ A    FP LPQV VFDTAFHQ++P +AY YALP  LYREH IRRYG HGTSH
Sbjct: 118 PANLTGLAATRRLFPDLPQVAVFDTAFHQSLPPRAYRYALPESLYREHGIRRYGFHGTSH 177

Query: 186 FYVCREAAKVLGKDVKDINVICAHLGNGASVAAIKGGKSVDTSMGLTPLEGLVMGTRCGD 245
            YV R A  + G  ++    + AHLGNG S  A+  G+S+DTSMGLTPLEGL MGTR GD
Sbjct: 178 AYVSRRADALSG--LEGGGWLTAHLGNGCSACAVWKGQSLDTSMGLTPLEGLAMGTRSGD 235

Query: 246 LDPSIIFHLVKQLGYTLDEVNNLLNKQSGLLGISELTNDCRGIEEGYHDGHKGATLALDI 305
           +DP +  HL +QLG++L+ ++ +LN++SGLLG+S LTND R +E    DGH GATLA+++
Sbjct: 236 VDPGLHAHLSRQLGWSLERIDEVLNRESGLLGLSGLTNDMRELEAAEADGHPGATLAIEV 295

Query: 306 FCYRLAKYIASYTVPLGRLDAIIFTGGIGENSNLIREKVLNLLEIFNFKVDDILNKAARF 365
           FCYR+AK +A+ +  L RLD ++FTGGIGENS+L+RE+V  LL  F  +++  +N     
Sbjct: 296 FCYRIAKSLAALSCALPRLDGLVFTGGIGENSSLVRERVTALLPHFGLQLNRTVNSETIR 355

Query: 366 GQQGVITQAGTPIAMVIPTNEEWVIAED 393
           G++G I   G  +  VIPT+EE  IA +
Sbjct: 356 GKEGRIDAGGRQL-WVIPTDEEGQIATE 382


Lambda     K      H
   0.321    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 465
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 392
Length adjustment: 31
Effective length of query: 370
Effective length of database: 361
Effective search space:   133570
Effective search space used:   133570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_086512003.1 BZY95_RS21880 (acetate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.31245.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31245.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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