Alignments for a candidate for leuD in Haloechinothrix alba DSM 45207

Align 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate WP_089299976.1 CHB84_RS03305 3-isopropylmalate dehydratase small subunit

Query= BRENDA::P9WK95
         (198 letters)



>NCBI__GCF_900188115.1:WP_089299976.1
          Length = 200

 Score =  280 bits (716), Expect = 1e-80
 Identities = 138/197 (70%), Positives = 153/197 (77%)

Query: 1   MEAFHTHSGIGVPLRRSNVDTDQIIPAVFLKRVTRTGFEDGLFAGWRSDPAFVLNLSPFD 60
           MEAF  H+GIGVPLRRSNVDTDQIIPAV+LKRV+RTGFEDGLFA WR D  FVLN   F 
Sbjct: 1   MEAFTQHTGIGVPLRRSNVDTDQIIPAVYLKRVSRTGFEDGLFAAWRHDETFVLNQEAFR 60

Query: 61  RGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDDV 120
            GSVLVAGPDFGTGSSREHAVWALM+YGFRVVIS+RF DIFRGNAGK GLL AE  Q DV
Sbjct: 61  HGSVLVAGPDFGTGSSREHAVWALMNYGFRVVISARFADIFRGNAGKQGLLTAECEQSDV 120

Query: 121 ELLWKLIEQSPGLEITANLQDRIITAATVVLPFKIDDHSAWRLLEGLDDIALTLRKLDEI 180
           E +WK++E  PG E+  +L D  + A   V  F IDD++ WRL+EGLDDIALTLR   EI
Sbjct: 121 EQIWKILEHEPGTEVAVDLADMTVRAKDFVTTFTIDDYTRWRLMEGLDDIALTLRHAAEI 180

Query: 181 EAFEGACAYWKPRTLPA 197
           +AFEG    WKP T  A
Sbjct: 181 DAFEGTRPAWKPTTTEA 197


Lambda     K      H
   0.322    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 230
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 200
Length adjustment: 21
Effective length of query: 177
Effective length of database: 179
Effective search space:    31683
Effective search space used:    31683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_089299976.1 CHB84_RS03305 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.30893.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30893.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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