Alignments for a candidate for thrC in Haloechinothrix alba DSM 45207

Align Threonine synthase; TS; EC 4.2.3.1 (uncharacterized)
to candidate WP_089301679.1 CHB84_RS12065 threonine synthase

Query= curated2:Q58860
         (405 letters)



>NCBI__GCF_900188115.1:WP_089301679.1
          Length = 425

 Score =  251 bits (641), Expect = 3e-71
 Identities = 139/358 (38%), Positives = 207/358 (57%), Gaps = 10/358 (2%)

Query: 27  LEIIYDYEEIKDKVSEEKLRKREIGVWRYLEYLPVKDESKIVSLCEGG-TPLYRCNNLEK 85
           LE+ YD+  ++    E   R     +WRY + LPV      +   E G T L R + L K
Sbjct: 50  LEVAYDFGTVRRSDIESGPRN----IWRYKKLLPVPSNVDQIPNTEPGCTKLIRADRLAK 105

Query: 86  ELGIKELYVKNEGANPTGSFKDRGMTVGVTRANELGVEVVGCASTGNTSASLAAYSARSG 145
           ELG++ ++VK++  NPT SFKDR + V +  A E G +V+ C STGN + ++A+ +AR+G
Sbjct: 106 ELGVRRIWVKDDTGNPTHSFKDRVVAVALAAAREFGFDVLACPSTGNLANAVASAAARAG 165

Query: 146 KKCIVLLPEGKVALGKLAQAMFYGAKVIQVKGNFDDALDMVKQLAKEKLIYLLNSIN--P 203
              +VL+P   +   K+     Y   +I V GN+DD   +  +LA E   +   ++N  P
Sbjct: 166 WDSVVLIPSS-LEQAKVLTTAVYDGSLIAVDGNYDDVNRLATELASENENWAFVNVNVRP 224

Query: 204 FRLEGQKTIAFEICDQLNWQVPDRVIVPVGNAGNISAIWKGFKEFEITGIIDELP-KMTG 262
           +  EG KT+AFE+ +QL W++P++++VP+ +   ++ + KGF E    G+++  P  + G
Sbjct: 225 YYSEGSKTLAFEVAEQLGWRIPEQIVVPIASGSQLTKVDKGFTELSEVGLVEPSPYTVFG 284

Query: 263 IQADGAKPIVEAFRKRAKDIIPYKNPETIATAIRIGNPVNAPKALDAIYSSGGYAEAVTD 322
            QA G  P+  AF K   D++    P+TIA ++ IGNP + P  LD +  +GG  E VTD
Sbjct: 285 AQATGCSPVSSAF-KSGLDVVQPTKPDTIARSLAIGNPADGPYVLDTVNRTGGAIEDVTD 343

Query: 323 EEIVEAQKLLARKEGIFVEPASASSIAGLKKLLEEGIIDRDERIVCITTGHGLKDPDA 380
           EE+VE  KLLAR EGIF E A   ++A  KKL+E G ID D   V + TG GLK  DA
Sbjct: 344 EEVVEGIKLLARTEGIFAETAGGVTVACAKKLIEAGKIDPDAETVLMITGDGLKTLDA 401


Lambda     K      H
   0.317    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 466
Number of extensions: 30
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 425
Length adjustment: 31
Effective length of query: 374
Effective length of database: 394
Effective search space:   147356
Effective search space used:   147356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_089301679.1 CHB84_RS12065 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.6876.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6876.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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