Alignments for a candidate for argG in Haloechinothrix alba DSM 45207

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_089303056.1 CHB84_RS19220 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_900188115.1:WP_089303056.1
          Length = 398

 Score =  327 bits (837), Expect = 5e-94
 Identities = 164/391 (41%), Positives = 255/391 (65%), Gaps = 2/391 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQG-EEVEEAREKALRTGASKAIALD 60
           ++VLAYSGGLDTS+ + W+ E   AEVIA  AD+GQG E++E  R++AL  GA++A+  D
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAVAADVGQGGEDLETIRKRALDCGAAEAVVAD 63

Query: 61  LKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGN 120
           +++EF   +  P ++A A+Y   Y L ++++RPLI KHLV  A++ GA  +AHG TGKGN
Sbjct: 64  VRQEFTEQYCLPAVQANALYMDRYPLVSALSRPLIVKHLVDAAKQHGASTVAHGCTGKGN 123

Query: 121 DQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLH 180
           DQVRFE+   AL PD++VIAP R++++  R++ IAYAE   +P+ VT+  P+S+D N+  
Sbjct: 124 DQVRFEVGIGALAPDLEVIAPVRDFAWT-REKAIAYAEQRDLPIDVTKSSPFSVDQNVFG 182

Query: 181 ISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQ 240
            + E G LED W  P K ++  T DP      P+ V + F  G PVA++G  ++    ++
Sbjct: 183 RAVETGFLEDLWNAPTKDVYSYTSDPSLNAGKPDEVVISFERGVPVAIDGTPVTVLEAIE 242

Query: 241 RLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDM 300
           +LN+  G HGVGR+D+VE+R VG+KSR VYE PG   L  A + +E++T++R++   +  
Sbjct: 243 QLNKRAGEHGVGRLDMVEDRLVGIKSREVYEAPGAIALITAHQELEAVTVERDLARFKRQ 302

Query: 301 LSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQ 360
           +  ++ ELVY G W++P + AL  +     + VTG  R+ L+ G+  V GR++ +SLY  
Sbjct: 303 VEQRWGELVYDGLWFSPLKYALDDFIASTQQHVTGDIRMVLHGGSATVNGRRSAQSLYDF 362

Query: 361 DLVSFDEAGGYDQKDAEGFIKIQALRLRVRA 391
           +L ++DE   +DQ  A+GF+ +  L  ++ A
Sbjct: 363 NLATYDEGDSFDQSQAKGFVHLWGLPSKIAA 393


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 415
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 398
Length adjustment: 31
Effective length of query: 369
Effective length of database: 367
Effective search space:   135423
Effective search space used:   135423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_089303056.1 CHB84_RS19220 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.28429.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28429.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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