Alignments for a candidate for asp-kinase in Desulfurobacterium atlanticum DSM 15668

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_089322638.1 CHB58_RS03055 aspartate kinase

Query= SwissProt::Q88EI9
         (411 letters)



>NCBI__GCF_900188395.1:WP_089322638.1
          Length = 403

 Score =  468 bits (1205), Expect = e-136
 Identities = 242/402 (60%), Positives = 309/402 (76%), Gaps = 1/402 (0%)

Query: 3   LIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQPV 62
           L+VQKFGGTS+GSI+RI+ VA +V + +  G+D+VVV+SAMSGET+RLI L K+IT +P 
Sbjct: 2   LVVQKFGGTSMGSIDRIKHVASRVIEEKSKGNDVVVVVSAMSGETDRLIQLVKEITSEPS 61

Query: 63  PRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQKIR 122
            R++D +V+TGEQV+  LL++ L   G  AVS TG Q  I TD +  KARIL+ID  +IR
Sbjct: 62  ERDMDFVVATGEQVSAGLLSITLNSLGYDAVSLTGWQAGIKTDKAFTKARILEIDTDRIR 121

Query: 123 ADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTD 182
             LK G++VV+ GFQG+ E G ITTLGRGGSDT+ VA+AAALKAD C IYTDVDGVYT D
Sbjct: 122 NYLKNGKIVVITGFQGITEEGDITTLGRGGSDTSAVAIAAALKADRCDIYTDVDGVYTAD 181

Query: 183 PRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFKEGPGTLITI 242
           PR+V  AR+++ I++EEMLE+ASLG+KVLQIRSVEFA KY VPLRV  +F    GTLI  
Sbjct: 182 PRIVENARKIDVISYEEMLELASLGAKVLQIRSVEFAMKYKVPLRVRSTFTTDEGTLIK- 240

Query: 243 DEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQNVAHDN 302
           +E+  ME+ ++ GIA N++EA++T+  VPD PG+A K+   ++ +NI VDMIVQNV+ D 
Sbjct: 241 EEDAEMEKVVVRGIAHNKNEARITVERVPDKPGIAAKLFEALAEANIPVDMIVQNVSVDG 300

Query: 303 TTDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHAGVASCMFE 362
            TD +FTV +N+  KAQ + E  A EIGAR VI D KIAKVSIVG+GMR+HAGVA  +F+
Sbjct: 301 YTDISFTVDKNDISKAQKITEKVAEEIGARGVITDDKIAKVSIVGLGMRNHAGVAGKVFD 360

Query: 363 ALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLD 404
            LAK  INI MISTSEIK+S ++EEK+ ELAVR LH AF+LD
Sbjct: 361 TLAKYGINILMISTSEIKISCIIEEKFTELAVRVLHEAFNLD 402


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 474
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 403
Length adjustment: 31
Effective length of query: 380
Effective length of database: 372
Effective search space:   141360
Effective search space used:   141360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_089322638.1 CHB58_RS03055 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.14618.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14618.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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