Alignments for a candidate for leuD in Desulfurobacterium atlanticum DSM 15668

Align 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate WP_089323376.1 CHB58_RS06895 3-isopropylmalate dehydratase small subunit

Query= BRENDA::Q58673
         (168 letters)



>NCBI__GCF_900188395.1:WP_089323376.1
          Length = 169

 Score =  189 bits (481), Expect = 2e-53
 Identities = 90/165 (54%), Positives = 121/165 (73%)

Query: 4   IIKGRVWKFGNNVDTDAILPARYLVYTKPEELAQFVMTGADPDFPKKVKPGDIIVGGKNF 63
           + +G+ +KFG++++TD I+PARYL  + P ELA+  M  ADP+FP KV+ GDIIV GKNF
Sbjct: 5   VYRGKAFKFGDDINTDEIIPARYLNTSDPAELAKHCMEDADPEFPSKVQKGDIIVAGKNF 64

Query: 64  GCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECKGISEKVNEGDELEVN 123
           GCGSSREHAP+ +K AG+S VIA+SFARIFYRN IN+GLP+ E     E + EGD +EVN
Sbjct: 65  GCGSSREHAPIAIKAAGVSAVIAKSFARIFYRNCINIGLPIFESPEAVEGIEEGDIVEVN 124

Query: 124 LETGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKKKMAESQ 168
             TG I+N+T     +   +P  + EI++AGGLM Y KKK+ E++
Sbjct: 125 PVTGIIRNITKNTEFQATPIPPEIREIMDAGGLMEYAKKKLKENR 169


Lambda     K      H
   0.317    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 121
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 169
Length adjustment: 18
Effective length of query: 150
Effective length of database: 151
Effective search space:    22650
Effective search space used:    22650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)

Align candidate WP_089323376.1 CHB58_RS06895 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR02084 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.14591.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14591.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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