Alignments for a candidate for dapC in Desulfurobacterium atlanticum DSM 15668

Align N-succinyldiaminopimelate-aminotransferase (EC 2.6.1.17) (characterized)
to candidate WP_089323728.1 CHB58_RS08740 succinyldiaminopimelate transaminase

Query= metacyc::MONOMER-6501
         (397 letters)



>NCBI__GCF_900188395.1:WP_089323728.1
          Length = 387

 Score =  181 bits (458), Expect = 4e-50
 Identities = 123/400 (30%), Positives = 191/400 (47%), Gaps = 44/400 (11%)

Query: 1   MNPRLDALHPYPFEKL---RALLADAGKPTHDLPPINLSIGEPKHAAPACVGQAIAANLA 57
           MN  L  + PYP ++L   + LL   GK  +D        G+PK      + +A+   + 
Sbjct: 1   MNSVLRNMKPYPMDELVKAKELLKKDGKKIYDF-----GTGDPKEPTAPFIREAVKTAIP 55

Query: 58  GLSVYPSTKGEPALRQAISQWLSRRYSIPAPDPESEVLPVLGSREALFAFAQTVIDPSAG 117
            +S YP+ KG   LR+AIS W  RR+ +   D E E++P  GS+EA+F F    ID  + 
Sbjct: 56  EVSQYPTVKGRKDLREAISSWFKRRFDVEL-DSEKEIIPSAGSKEAIFHFPLVFIDADSD 114

Query: 118 AL-VVCPNPFYQIYEGAALLAGATPYYVNADPARDFGLRTGRVPDEVWRRTQLVFVCSPG 176
              V+   P Y +YE   L A   P          F LR  ++P+E+ + T++V++  P 
Sbjct: 115 KKRVIFGTPAYPVYERGTLFAQGIPTSYTLKYEEGFLLRLDKMPEEILKETKIVWLNYPH 174

Query: 177 NPAGNVMSLEEWRTLFELSDRHGFVIAAYECYSEIYLDEDTPPLGSLQAARRLGRDRYTN 236
           NP G    L  +  ++++   +  ++ + ECY+EIY +E  P      +A ++G++   N
Sbjct: 175 NPTGATAPLSYFEDMYQICREYDIIMCSDECYTEIYFEEKPP------SALQVGKE---N 225

Query: 237 LVAFSSLSKRSNVPGMRSGFVAGDAALLARFLLYRTYHGSAMSPVVSAASIAAW------ 290
           +V F SLSKRS + G RSGFVAGD+ ++  +L +R+  G      +   +  AW      
Sbjct: 226 VVVFHSLSKRSGMTGYRSGFVAGDSRIIQEYLRFRSSFGVGSPDFIQVGAREAWKDESHV 285

Query: 291 -SMRRMCRKTAQYRAKFEAVLPILQNVLDVRAPQASFYLWAGTP----GSDTAFARELYG 345
              R + RK  +   KF       +   +    +ASFY W   P      D AF    Y 
Sbjct: 286 EERRLIFRKKKEIFEKF-----FKEEGFEFLDVKASFYFWVKVPFGLTSKDYAFHLLKY- 339

Query: 346 RTGVTVLPGSLLAREAHNANPGQGRIRIALVAPLDQCVQA 385
             G+ V PG          + G+G  RIALV  +D+C +A
Sbjct: 340 --GIVVSPGEFF------GSGGEGFFRIALVPSVDECEEA 371


Lambda     K      H
   0.321    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 408
Number of extensions: 20
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 387
Length adjustment: 31
Effective length of query: 366
Effective length of database: 356
Effective search space:   130296
Effective search space used:   130296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate WP_089323728.1 CHB58_RS08740 (succinyldiaminopimelate transaminase)
to HMM TIGR03537 (dapC: succinyldiaminopimelate transaminase (EC 2.6.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.20695.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20695.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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