Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_090446630.1 BLS63_RS16475 dihydroxy-acid dehydratase
Query= SwissProt::Q1MIB2
(612 letters)
>NCBI__GCF_900100495.1:WP_090446630.1
Length = 612
Score = 922 bits (2384), Expect = 0.0
Identities = 459/608 (75%), Positives = 513/608 (84%), Gaps = 2/608 (0%)
Query: 1 MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60
MP YRS+T+THGRNMAGAR LWRATGMKD DF KPIIA+ NSFTQFVPGHVHLKD+GQLV
Sbjct: 1 MPDYRSKTSTHGRNMAGARALWRATGMKDEDFKKPIIAIANSFTQFVPGHVHLKDMGQLV 60
Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120
AREIE AGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRE+IADSVEYMVNAHCADA+VCIS
Sbjct: 61 AREIERAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCIS 120
Query: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKVVMHGKTHALDLVDAMVAAADDKISDED 180
NCDKITPGMLMA+LRLNIP VFVSGGPMEAGK + +H LDLVDAMV AADD SDE
Sbjct: 121 NCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKL--ASHGLDLVDAMVVAADDSCSDEK 178
Query: 181 VQTIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHLDRKRLFVEAGHLIV 240
V ERSACPTCGSCSGMFTANSMNCL EALGL+LPGNGSTLATH DR++LF+ AG L V
Sbjct: 179 VAEYERSACPTCGSCSGMFTANSMNCLMEALGLALPGNGSTLATHADREQLFLRAGRLAV 238
Query: 241 DLARRYYEQDDVKALPRTIASKQAFENAMTLDIAMGGSTNTVLHILAAAHEGEIDFTMAD 300
+L +RYY ++D LPR IA+ +AFENAM+LDIAMGGSTNT+LH+LAAA EGE+ F + D
Sbjct: 239 ELCQRYYGENDESVLPRNIANFKAFENAMSLDIAMGGSTNTILHLLAAAQEGEVAFDLRD 298
Query: 301 IDALSRRVPCLSKVAPAKSDVHMEDVHRAGGIMSILGELDKGGLLNRDCPTVHAETLGDA 360
ID LSR+VP L KVAP HMEDVHRAGGI SILGEL +GGLL+ D TVH+ ++ DA
Sbjct: 299 IDRLSRKVPQLCKVAPNIQKYHMEDVHRAGGIFSILGELARGGLLHTDVATVHSPSMADA 358
Query: 361 IDRWDITRTNSETVRKFYRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKDG 420
I +WDIT+T E V F++A P GIPTQVAFSQ RW LD DR G IRSVEH +S++G
Sbjct: 359 IAQWDITQTQDEKVHTFFKAGPAGIPTQVAFSQATRWPSLDDDRAEGCIRSVEHAYSQEG 418
Query: 421 GLAVLKGNLAIDGCIVKTAGVDESILKFSGPARVFESQDASVKAILANEVKAGDVVVIRY 480
GLAVL GN+A+DGC+VKTAGVDESI F G A++FESQD +V+ IL +EVK GD+V+IRY
Sbjct: 419 GLAVLYGNIALDGCVVKTAGVDESIHVFEGNAKIFESQDGAVRGILNDEVKPGDIVIIRY 478
Query: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAANGGTIGL 540
EGPKGGPGMQEMLYPTSYLKSKGLGK CAL+TDGRFSGGTSGLSIGHASPEAA GG IGL
Sbjct: 479 EGPKGGPGMQEMLYPTSYLKSKGLGKQCALLTDGRFSGGTSGLSIGHASPEAAAGGAIGL 538
Query: 541 VREGDMIDIDIPNRTISLRVSETELAARRAEQDAKGWYPTEVRKRNVTTALKAYAAFATS 600
VR+GD + IDIP R+I+L VS+ ELAARR EQD KGW P R R VTTALKAYA ATS
Sbjct: 539 VRDGDKVLIDIPKRSINLLVSDEELAARRVEQDQKGWKPAAPRARKVTTALKAYALLATS 598
Query: 601 ADRGAVRD 608
AD+GAVRD
Sbjct: 599 ADKGAVRD 606
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1201
Number of extensions: 34
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 612
Length adjustment: 37
Effective length of query: 575
Effective length of database: 575
Effective search space: 330625
Effective search space used: 330625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate WP_090446630.1 BLS63_RS16475 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.21747.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21747.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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