Alignments for a candidate for cysE in Desulfuromonas acetexigens

Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate WP_092052273.1 BQ4888_RS00430 serine O-acetyltransferase

Query= SwissProt::Q06750
         (217 letters)



>NCBI__GCF_900111775.1:WP_092052273.1
          Length = 228

 Score =  241 bits (614), Expect = 1e-68
 Identities = 121/219 (55%), Positives = 154/219 (70%), Gaps = 9/219 (4%)

Query: 3   FRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQVSR 62
           F  LKED   VF++DPA RS  E+   Y G HA+  HR AHAL++RKFYF  RLIS VSR
Sbjct: 2   FSTLKEDFKVVFERDPAVRSKLEICFCYPGFHALLMHRAAHALWRRKFYFFGRLISHVSR 61

Query: 63  FFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIK 122
           F TGIEIHPGA IG+ FFIDHGMGVVIGET EIG+N T++ GVTLGGT   K KRHPT+ 
Sbjct: 62  FLTGIEIHPGAKIGKGFFIDHGMGVVIGETAEIGDNCTLYHGVTLGGTSWAKEKRHPTLG 121

Query: 123 DDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKK--VRRDL 180
           ++ +I +GAK+LG  TVG+ SKIG+ SVV+ +VP  STVVG+PGR+V+ +G K   R DL
Sbjct: 122 NNVVIGSGAKILGPFTVGDNSKIGSNSVVVKEVPPNSTVVGVPGRIVLSDGAKPESRADL 181

Query: 181 NHQDLPDPVA-------DRFKSLEQQILELKAELEDRKE 212
            H  LPDP A       D+ ++LE+++  L  +   + +
Sbjct: 182 EHGRLPDPEAKAISCLFDQLRALEEKVNRLSGDASGKAD 220


Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 239
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 228
Length adjustment: 22
Effective length of query: 195
Effective length of database: 206
Effective search space:    40170
Effective search space used:    40170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_092052273.1 BQ4888_RS00430 (serine O-acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.32042.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32042.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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