Alignments for a candidate for ilvC in Desulfuromonas acetexigens

Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate WP_092053010.1 BQ4888_RS02095 ketol-acid reductoisomerase

Query= metacyc::MONOMER-18814
         (338 letters)



>NCBI__GCF_900111775.1:WP_092053010.1
          Length = 339

 Score =  447 bits (1149), Expect = e-130
 Identities = 214/339 (63%), Positives = 263/339 (77%), Gaps = 1/339 (0%)

Query: 1   MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGVNVTVG-LRKSGASWNKAANA 59
           MKV+YDKDA+L ++KGK + IIGYGSQGHAHA NLK+SG+ V +    K GA+W KA  A
Sbjct: 1   MKVYYDKDANLGVLKGKKIAIIGYGSQGHAHANNLKESGIEVIIAEAPKGGANWVKAEKA 60

Query: 60  GLQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPR 119
           G  V    +AVK +DV+MILLPDE   D+Y+ ++   +K G+ + F HGFN+HYG ++P 
Sbjct: 61  GFTVMTTQDAVKASDVIMILLPDELQGDIYREQIGPFLKPGSYIGFGHGFNIHYGQIVPG 120

Query: 120 ADLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGII 179
            D++V M+APK PGHTVR  Y  GGGVP LIAV Q+ S   +D+A++YA+  GGGRAGII
Sbjct: 121 KDINVFMVAPKGPGHTVRHEYQLGGGVPCLIAVEQDPSANTKDVAMAYASGIGGGRAGII 180

Query: 180 ETNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIY 239
           ET F+EETETDLFGEQAVLCGG   L++AGFETLVEAGYAPEMAYFECLHELKLIVDL+Y
Sbjct: 181 ETTFKEETETDLFGEQAVLCGGATALVQAGFETLVEAGYAPEMAYFECLHELKLIVDLMY 240

Query: 240 EGGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAP 299
           EGGIANM YSISN AEYG++  GPR+VT ETK AMK+ L +IQ GE+A+ ++LEN+A  P
Sbjct: 241 EGGIANMRYSISNTAEYGDFTRGPRIVTSETKVAMKKILEEIQNGEFAREWMLENRANKP 300

Query: 300 TLISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338
            L + RR  A HQIEEVG +LR MM WI KNKMVD+ +N
Sbjct: 301 VLNALRRKGAAHQIEEVGERLRGMMSWIGKNKMVDKERN 339


Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 443
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 339
Length adjustment: 28
Effective length of query: 310
Effective length of database: 311
Effective search space:    96410
Effective search space used:    96410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_092053010.1 BQ4888_RS02095 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.4621.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4621.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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