Alignments for a candidate for hisD in Desulfuromonas acetexigens

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate WP_092055907.1 BQ4888_RS07555 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>NCBI__GCF_900111775.1:WP_092055907.1
          Length = 430

 Score =  396 bits (1018), Expect = e-115
 Identities = 212/428 (49%), Positives = 279/428 (65%)

Query: 1   MVTTLRQTDPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRID 60
           M+ TLR +DP F   F             V   V+ I+  VR  G+ A+ DY+ RFDR++
Sbjct: 1   MIQTLRFSDPGFADAFRKIEERGETAPAGVVETVQAIIADVRARGNQAVFDYTLRFDRLE 60

Query: 61  LEKTGIAVTEAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSR 120
           L    + V   E+D A  + P  +  AL+LA  RI  +H +Q  +    TD   V LG  
Sbjct: 61  LSAATVEVQAEELDRALASIPTDSRAALELAAKRIADYHRKQKQETWISTDEADVLLGQM 120

Query: 121 WTAIEAVGLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAG 180
              ++ VG+YVPGG A+YPSSVLMNA+PAKVAGV  +VMVVP P G +NP VL AAR+AG
Sbjct: 121 VRPLDRVGIYVPGGKAAYPSSVLMNAVPAKVAGVAEVVMVVPMPGGEVNPFVLAAARIAG 180

Query: 181 VSEIYRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVL 240
           V  ++++GGAQA+AALAYGT +I  V KI GPGN YVA AK++VFG V IDMIAGPSE+L
Sbjct: 181 VDRVFKIGGAQAVAALAYGTASIPKVDKITGPGNIYVATAKQLVFGKVDIDMIAGPSEIL 240

Query: 241 IVADKDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASA 300
           I+ D    P  +AADLL QAEHD  A SIL+T DE FA  V + VE+QL  L+R   A  
Sbjct: 241 IINDGSGVPAHLAADLLGQAEHDELASSILITTDEDFAKQVADEVEKQLRQLSRESIARQ 300

Query: 301 SWRDFGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIG 360
           S   +GA+IL ++ ++AI  +NRIA EHLE+AV +    +PRIR+AG+IF+G +TPE  G
Sbjct: 301 SIDRYGAIILAQNLDEAIDFSNRIAPEHLELAVDNPFEILPRIRHAGAIFMGHHTPEAAG 360

Query: 361 DYVGGCNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAH 420
           DY+ G NH LPT  +ARF S LS+ D++K++S++      L  LG   + IA  EGL AH
Sbjct: 361 DYLAGPNHTLPTGGTARFFSPLSLDDFVKKSSIVSFSRAGLARLGKEIVHIAELEGLQAH 420

Query: 421 AQSVAIRL 428
           A+SV++RL
Sbjct: 421 ARSVSLRL 428


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 494
Number of extensions: 27
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 430
Length adjustment: 32
Effective length of query: 398
Effective length of database: 398
Effective search space:   158404
Effective search space used:   158404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_092055907.1 BQ4888_RS07555 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.3139.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3139.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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