Alignments for a candidate for cysK in Desulfuromonas acetexigens

Align Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; O-acetylserine sulfhydrylase; EC 2.5.1.47 (characterized)
to candidate WP_092055958.1 BQ4888_RS07640 cysteine synthase A

Query= SwissProt::Q59966
         (329 letters)



>NCBI__GCF_900111775.1:WP_092055958.1
          Length = 317

 Score =  486 bits (1250), Expect = e-142
 Identities = 236/313 (75%), Positives = 280/313 (89%)

Query: 8   FADNSQTIGKTPLVRLNRIVKGAPATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLLGP 67
           +ADNS +IG+TPLVRLNR+     AT+L K+EGRNPAYSVKCRIGAAMIWDAE++GLLGP
Sbjct: 5   YADNSLSIGRTPLVRLNRLAPVGGATILGKVEGRNPAYSVKCRIGAAMIWDAEKKGLLGP 64

Query: 68  GKELIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLVLTEGVKGMT 127
           GKE++EPTSGNTGIALAFVAAARG+P+TLTMPETMSLERRK+L A+GA LVLT G KGM 
Sbjct: 65  GKEIVEPTSGNTGIALAFVAAARGLPITLTMPETMSLERRKVLQAFGANLVLTPGAKGMG 124

Query: 128 GAVRRAEDIAASDPDRYVLLQQFRNPANPAIHEQTTGPEIWEDTGGAIDILVSGVGTGGT 187
           GA+  AE++AASDP+RYVLL QF+NPANPAIHEQTTGPEIWEDT G ID+LV+GVGTGGT
Sbjct: 125 GAIAAAEELAASDPNRYVLLHQFKNPANPAIHEQTTGPEIWEDTDGGIDVLVAGVGTGGT 184

Query: 188 ITGVSRYIKQTQGKPILSVAVEPEASPVISQQRSGLPLKPGPHKIQGIGAGFIPENLDLS 247
           I+G+SRYIK+T+GK IL+VAVEP  SPVISQ+ +G  LKPGPHKIQGIGAGFIP+ LDLS
Sbjct: 185 ISGISRYIKKTRGKQILAVAVEPSDSPVISQKLAGAELKPGPHKIQGIGAGFIPDTLDLS 244

Query: 248 LVDQVERVSNEEAIAYARRLAQEEGLISGISCGAAVAAAVRLAQQSEHAGKTIVVVLPDS 307
           +VD+VE+VSN+EAI +ARRLA+EEG+++GISCGAA A AVRLA + E  GKTIVV+LPDS
Sbjct: 245 VVDRVEQVSNDEAIDFARRLAKEEGILAGISCGAATAVAVRLAARPEFQGKTIVVILPDS 304

Query: 308 GERYLSTALFDGI 320
           GERYLS+ L++ +
Sbjct: 305 GERYLSSVLYENL 317


Lambda     K      H
   0.316    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 421
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 317
Length adjustment: 28
Effective length of query: 301
Effective length of database: 289
Effective search space:    86989
Effective search space used:    86989
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_092055958.1 BQ4888_RS07640 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.19592.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19592.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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