Alignments for a candidate for cysK in Desulfuromonas acetexigens

Align cysteine synthase (EC 2.5.1.47); L-3-cyanoalanine synthase (EC 4.4.1.9) (characterized)
to candidate WP_092057399.1 BQ4888_RS11500 cysteine synthase A

Query= BRENDA::Q84IF9
         (308 letters)



>NCBI__GCF_900111775.1:WP_092057399.1
          Length = 306

 Score =  363 bits (932), Expect = e-105
 Identities = 192/303 (63%), Positives = 223/303 (73%)

Query: 2   ARTVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGK 61
           A T  S    IG TP V++ R+ D   A V+ KLE MNPG SVKDRIALAMIEAAE+ G 
Sbjct: 3   ATTSTSPLGQIGQTPLVQITRLGDGSGAAVWGKLESMNPGGSVKDRIALAMIEAAEQQGL 62

Query: 62  LKPGDTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQ 121
           LKPG T+VEPTSGNTGIGL++V A KGYK +L MPDTMS ERR LL AYGAELVLTPGAQ
Sbjct: 63  LKPGATVVEPTSGNTGIGLSLVCALKGYKLILTMPDTMSQERRRLLGAYGAELVLTPGAQ 122

Query: 122 GMRGPIAKAEELVREHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
           GMRG I  AEEL R    +MPQQFKN ANP +H  TTG EI+  +   +DAFVAGVGTGG
Sbjct: 123 GMRGAIDAAEELARAKKGYMPQQFKNPANPLVHERTTGPEILAALDGAVDAFVAGVGTGG 182

Query: 182 TTTGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVI 241
           T TG G+ L+   P + I AVEPADS VLSGG PG HKIQGIGAGFVPD+LDT+IY  VI
Sbjct: 183 TITGVGRALKARNPQVHIAAVEPADSAVLSGGDPGLHKIQGIGAGFVPDVLDTAIYQEVI 242

Query: 242 TVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKELGKGKKVLAIIPSNGERYLST 301
            V  ++A A AR+ AR EG+  GIS+GA + AAL+VA+ L  G+ V+ I+   GERYLST
Sbjct: 243 RVGNDDAIATARKLARVEGLFVGISAGANVFAALQVARRLKPGQNVVTILCDTGERYLST 302

Query: 302 PLY 304
            +Y
Sbjct: 303 GIY 305


Lambda     K      H
   0.314    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 299
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 306
Length adjustment: 27
Effective length of query: 281
Effective length of database: 279
Effective search space:    78399
Effective search space used:    78399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_092057399.1 BQ4888_RS11500 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.15656.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15656.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.