Alignments for a candidate for cysK in Desulfuromonas acetexigens

Align O-phosphoserine sulfhydrylase monomer (EC 2.5.1.47; EC 2.5.1.65) (characterized)
to candidate WP_092058309.1 BQ4888_RS15560 cysteine synthase family protein

Query= metacyc::MONOMER-20568
         (299 letters)



>NCBI__GCF_900111775.1:WP_092058309.1
          Length = 309

 Score =  308 bits (790), Expect = 8e-89
 Identities = 154/289 (53%), Positives = 207/289 (71%)

Query: 8   ETIGNTPLVRINHLNPNPKVQMYAKLEGFNPTGSVKDRIALKMIEQAEAEGKLHPGSTII 67
           + IGNTPLV +  L     V+++AKLEG NP GSVKDR A  M+++AE  G L PG TI+
Sbjct: 12  QAIGNTPLVELTRLAAGLPVRIFAKLEGNNPGGSVKDRPAWYMVKKAEESGLLSPGKTIL 71

Query: 68  EATSGNTGIGLAMIGRVKGYNVIIVMSEGVSIERRKMIKAFGAEIILTDKKLGTDGAIRK 127
           E TSGNTGI LAMIG  +GY V +VM   VS+ERR +++A+GAE++L+     TDGAIR 
Sbjct: 72  EPTSGNTGIALAMIGAARGYRVKLVMPACVSMERRAVLEAYGAEVVLSKACQTTDGAIRL 131

Query: 128 VAELVKENPGKYFNPNQFSNEYNKIAHYKTTAEEIWAQTKGTVTHFVAAVGTSGTLMGVG 187
             ++  ++P +Y+ PNQ++N  N +AHY+TT  EI+ QT G +  FVA +GTSGTLMG G
Sbjct: 132 AHQIFADDPDRYYMPNQYANPNNPLAHYETTGPEIFRQTAGEIDVFVAGMGTSGTLMGTG 191

Query: 188 KNLREKNPEIKIIEAQPTKGHYIQGLKSMEEAIVPAIYQADKIDEHILIESEEAFAKARE 247
           + LRE  P ++I+  +P  GH +QGLK+M EAIVP IY  +++DE + +E E+AF  AR 
Sbjct: 192 RFLREAKPGVRIVGIEPRLGHKVQGLKNMREAIVPEIYHEEELDEKLTVEDEDAFETARR 251

Query: 248 IVAQEGIFIGMSSGAAMLAAQKLAEKIDSGVIVVLFADRGEKYLSTKLF 296
           +  +EGIF+GMSSGAAM  A K+A+ + SGVIVVL  DRG++YLST LF
Sbjct: 252 LALEEGIFVGMSSGAAMAGALKVAQGMASGVIVVLLPDRGDRYLSTSLF 300


Lambda     K      H
   0.315    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 300
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 309
Length adjustment: 27
Effective length of query: 272
Effective length of database: 282
Effective search space:    76704
Effective search space used:    76704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate WP_092058309.1 BQ4888_RS15560 (cysteine synthase family protein)
to HMM TIGR01136 (cysteine synthase (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.16055.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16055.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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