Alignments for a candidate for argI in Desulfuromusa kysingii DSM 7343

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_092344192.1 BLU87_RS01670 ornithine carbamoyltransferase

Query= BRENDA::O93656
         (317 letters)



>NCBI__GCF_900107645.1:WP_092344192.1
          Length = 303

 Score =  319 bits (817), Expect = 6e-92
 Identities = 156/303 (51%), Positives = 218/303 (71%), Gaps = 4/303 (1%)

Query: 8   RDLLCLQDYTPEEIWTILETAKMLKIWQKIGKPHRLLEGKTLAMIFQKPSTRTRVSFEVA 67
           +D L L D+T E++ +I    + LK  QK G PH LL+G+TL MIF+K STRTRVSFEV 
Sbjct: 3   KDFLALSDWTLEDLESIFSLTRELKQKQKEGTPHPLLKGQTLGMIFEKSSTRTRVSFEVG 62

Query: 68  MAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYASVPVI 127
           M  LGGHAL+L++   Q+ RGE I DTARV+S Y D +MAR Y H+ +E+ A+ + VPVI
Sbjct: 63  MFQLGGHALFLHSGTTQMGRGEPIKDTARVMSGYCDGVMARTYSHQALEEFAQNSYVPVI 122

Query: 128 NGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATP 187
           NGLSD  HPCQ +AD  T+ E K   + +K  ++GDGNN+A+S + A   +G ++ +A+P
Sbjct: 123 NGLSDLYHPCQLVADIFTVTEHKEDYRNLKYCWIGDGNNMANSWINAAALVGFELRIASP 182

Query: 188 EGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKI 247
           +GYEPD++++  A+    +SG    L +DP +A   ADV+ TDVWASMGQE+E ++R K 
Sbjct: 183 KGYEPDKEIVALAK----KSGAKILLTNDPREAAAGADVLNTDVWASMGQESEQQKRAKA 238

Query: 248 FRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDEAENRLHAQKAVLA 307
           F  FQ+N D++K A P+ + MHCLPAHR EE+TD+V++ P S++++EAENRLHAQKA+LA
Sbjct: 239 FTGFQINADILKLADPEAVVMHCLPAHRNEEITDEVVEGPQSIIFNEAENRLHAQKAILA 298

Query: 308 LLL 310
            L+
Sbjct: 299 TLM 301


Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 295
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 303
Length adjustment: 27
Effective length of query: 290
Effective length of database: 276
Effective search space:    80040
Effective search space used:    80040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_092344192.1 BLU87_RS01670 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.23313.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23313.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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