Alignments for a candidate for argB in Desulfuromusa kysingii DSM 7343

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_092344194.1 BLU87_RS01680 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>NCBI__GCF_900107645.1:WP_092344194.1
          Length = 296

 Score =  362 bits (929), Expect = e-105
 Identities = 175/289 (60%), Positives = 229/289 (79%)

Query: 12  AKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQ 71
           A +L E LP+I+RF GKT+VIKYGGNAM  E LK GFARD+++MK +G+NPVVVHGGGPQ
Sbjct: 8   ANILMETLPWIKRFYGKTIVIKYGGNAMVEEHLKKGFARDIIMMKYIGMNPVVVHGGGPQ 67

Query: 72  IGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDA 131
           IG +L+ + IES FI GMRVTD+ TMDVVEMVLGG+VNK+IV  IN HGG+A+G+TGKD 
Sbjct: 68  IGKVLEAMHIESQFIQGMRVTDSETMDVVEMVLGGKVNKEIVTNINLHGGNAVGITGKDG 127

Query: 132 ELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNG 191
            L++A+KL +T   P+   PEIIDIG VGEV  V+  ++  L + +FIPVIAPIG G NG
Sbjct: 128 GLLKARKLEMTAINPDTLTPEIIDIGMVGEVESVDPSIIQGLKENNFIPVIAPIGGGLNG 187

Query: 192 ESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGG 251
           E++NINADLVAGK+A ALKAEKL+LLT+I G+ DKQG++++ +  ++V +LI +GTI GG
Sbjct: 188 ETFNINADLVAGKIAGALKAEKLILLTDIEGVKDKQGKLISTIDVQRVPDLINNGTISGG 247

Query: 252 MLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRKR 300
           M+PK+ C +EA+  GV   HIIDGR+ +A LLE+FTD G+GT ++  K+
Sbjct: 248 MIPKVNCCVEAIDAGVAKTHIIDGRMEHACLLEMFTDKGIGTAVARYKK 296


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 360
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 296
Length adjustment: 27
Effective length of query: 274
Effective length of database: 269
Effective search space:    73706
Effective search space used:    73706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_092344194.1 BLU87_RS01680 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.23510.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23510.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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