Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_092345630.1 BLU87_RS05690 dihydroxy-acid dehydratase
Query= SwissProt::Q1MIB2
(612 letters)
>NCBI__GCF_900107645.1:WP_092345630.1
Length = 618
Score = 875 bits (2262), Expect = 0.0
Identities = 436/612 (71%), Positives = 507/612 (82%), Gaps = 4/612 (0%)
Query: 1 MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60
MP+YRS + G+NMAGAR LW ATG+K DFGKPIIAVVNSFTQFVPGHVHLKDLGQLV
Sbjct: 1 MPIYRSAQSVQGKNMAGARALWLATGVKPKDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60
Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120
+IEA GG+AKEFNT+A+ DGIAMGH GMLYSLPSRELIAD+VEYM NAHC DA+VCIS
Sbjct: 61 VSQIEAHGGIAKEFNTMAICDGIAMGHQGMLYSLPSRELIADTVEYMANAHCVDALVCIS 120
Query: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKVVMHGKTHALDLVDAMVAAADDKISDED 180
NCDKITPGMLMAS+RLNIPT+FVSGGPMEAG+ + GK ALDLVDAMVAAA+ ++SDED
Sbjct: 121 NCDKITPGMLMASMRLNIPTIFVSGGPMEAGRATLQGKKLALDLVDAMVAAANPEVSDED 180
Query: 181 VQTIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHLDRKRLFVEAGHLIV 240
V ERS+CPTCGSCSGMFTANSMNCLTEALG+ LPGNGS +ATH DRK LF+EA I+
Sbjct: 181 VAVYERSSCPTCGSCSGMFTANSMNCLTEALGMGLPGNGSLVATHADRKGLFLEAAKRIM 240
Query: 241 DLARRYYEQDDVKALPRTIASKQAFENAMTLDIAMGGSTNTVLHILAAAHEGEIDFTMAD 300
DL +R+YE DD + LPR+IA + A+ENAM LDIAMGGSTNT+LH+LA A EGE+DFTMAD
Sbjct: 241 DLTKRWYEDDDQRVLPRSIACRGAYENAMRLDIAMGGSTNTILHLLAIAREGEVDFTMAD 300
Query: 301 IDALSRRVPCLSKVAPAKSDVHMEDVHRAGGIMSILGELDKGGLLNRDCPTVHAETLGDA 360
I+ LS + P L KVAPA HMEDVHRAGGI +ILGELD+ GL+ R+ PTVH+ TLG+A
Sbjct: 301 INRLSLQTPNLCKVAPAVQHYHMEDVHRAGGIFAILGELDRAGLIQRNVPTVHSPTLGEA 360
Query: 361 IDRWDITRTNSETVRKFYRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKDG 420
+D WD+ RT++ V +FYRAAPGG+ AF+Q R LD DRE G IR +H +S+DG
Sbjct: 361 LDCWDVLRTDAPDVHEFYRAAPGGVRCVEAFAQNNRSTSLDLDREKGCIRDQKHAYSQDG 420
Query: 421 GLAVLKGNLAIDGCIVKTAGVDESILKFSGPARVFESQDASVKAILANEVKAGDVVVIRY 480
GLAVL GNLA+DGCIVKTAGVDES L FSGPAR+FESQ+ +++ IL + V+ GDVVVIRY
Sbjct: 421 GLAVLYGNLALDGCIVKTAGVDESNLTFSGPARIFESQEDAIEGILGDVVQPGDVVVIRY 480
Query: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAANGGTIGL 540
EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGH SPEAA GG+I L
Sbjct: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHISPEAAEGGSIAL 540
Query: 541 VREGDMIDIDIPNRTISLRVSETELAARRAEQDAKG---WYPTEVRKRNVTTALKAYAAF 597
+++GD +DIDIP R IS++VSE L R+ E ++G W PT +R+R V+ AL+AYAA
Sbjct: 541 LQDGDRVDIDIPARKISMQVSEEVLQQRQTEMLSRGDQAWQPT-LRQRVVSRALQAYAAT 599
Query: 598 ATSADRGAVRDL 609
TSA RGAVRDL
Sbjct: 600 TTSAARGAVRDL 611
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1201
Number of extensions: 37
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 618
Length adjustment: 37
Effective length of query: 575
Effective length of database: 581
Effective search space: 334075
Effective search space used: 334075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate WP_092345630.1 BLU87_RS05690 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.1172.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1172.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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