Alignments for a candidate for ilvD in Desulfuromusa kysingii DSM 7343

Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_092348740.1 BLU87_RS11915 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-18815
         (557 letters)



>NCBI__GCF_900107645.1:WP_092348740.1
          Length = 570

 Score =  545 bits (1404), Expect = e-159
 Identities = 276/550 (50%), Positives = 380/550 (69%), Gaps = 8/550 (1%)

Query: 14  VARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADAAIDAIKASDANPQ 73
           V R+ +R+M  A+ + +EDF KP++ +A  ++  TPCN  ++ L D     I+A+     
Sbjct: 18  VERTASRTMLRAVRFTEEDFSKPVIAVAVPYTNGTPCNDHIRDLGDLVQHEIEAAGGKAI 77

Query: 74  VFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVIGGCDKNMPGGMIA 133
           +FGTP +SDG+SMGTE MKYSL+SREVIAD IE   +G  +DGV+ + GCDK +P  ++ 
Sbjct: 78  IFGTPVVSDGISMGTEAMKYSLVSREVIADAIELMTEGYQVDGVMTLSGCDKTIPAALMP 137

Query: 134 LARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQEDFEGVEKNACPSTG 193
           +AR ++ G+ +YGG+I PG    ++L IVS+FE +G  +AG++  E+   +E  ACP  G
Sbjct: 138 IARNDLVGLTLYGGSILPGQHGKQELNIVSAFEGIGAHSAGKIDAEELHEIECRACPGAG 197

Query: 194 SCGGMYTANTMSSSFEALGMSLLYSSTMANPDQ------EKVDSAAESARVLVEAIKQDI 247
           SCGGMYTANTM+S+ EALGMS+  S++    D+      +K   A +SAR L++ +++  
Sbjct: 198 SCGGMYTANTMASAIEALGMSMTGSASNMAVDRSNHISADKSQDAGDSARALIKLLQKGT 257

Query: 248 KPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRKVPVICNL 307
             R I+TRK+ ENA+ +  A GGSTNAVLH LA+A+ A V  T+ D  +I  KVP++ N 
Sbjct: 258 TARQIMTRKAFENALTVAWALGGSTNAVLHLLALANEAHVPLTLKDISKITAKVPLLGNF 317

Query: 308 KPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTPRADQDVI 367
           KP G+Y+  DLH+ GG+P VMK+LL AG LHGDCLT+TG+T+AE L + PD P ADQDV 
Sbjct: 318 KPFGRYLMNDLHELGGVPMVMKVLLDAGFLHGDCLTVTGQTIAENLVSAPDLP-ADQDVC 376

Query: 368 LPIEKALYAEG-HLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEAILADKI 426
            PI+      G H+ IL GNLA EG V K +G     ++GPARVF+ E+ A+ AIL+  I
Sbjct: 377 FPIDAPYAPAGRHIRILYGNLAPEGCVLKQSGKDLNSMSGPARVFDREEEALSAILSGHI 436

Query: 427 NAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMVVGHVAP 486
              DI+V+RY GPKGGPGM EML+P++A++G GLGESV  ITDGRFSGGT G+++GHVAP
Sbjct: 437 VPKDIIVIRYEGPKGGPGMREMLSPSAALMGAGLGESVALITDGRFSGGTHGIMIGHVAP 496

Query: 487 EAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVLAKFSKL 546
           EA  GG +ALV+EGD I I+  K  L L + ++E   R+ NW++P  RY  GVL K++KL
Sbjct: 497 EAQAGGNLALVEEGDCIEINLDKQELNLVIDEQEFVLRQKNWQEPPQRYNHGVLGKYAKL 556

Query: 547 ASTASKGAVT 556
            S+ASKGAVT
Sbjct: 557 VSSASKGAVT 566


Lambda     K      H
   0.316    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 887
Number of extensions: 41
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 570
Length adjustment: 36
Effective length of query: 521
Effective length of database: 534
Effective search space:   278214
Effective search space used:   278214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)

Align candidate WP_092348740.1 BLU87_RS11915 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.1350.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1350.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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