Alignments for a candidate for ilvE in Desulfuromusa kysingii DSM 7343

Align Branched-chain-amino-acid aminotransferase 2; BCAT 2; Vegetative protein 85; VEG85; EC 2.6.1.42 (characterized)
to candidate WP_092349638.1 BLU87_RS13210 branched-chain amino acid aminotransferase

Query= SwissProt::P39576
         (363 letters)



>NCBI__GCF_900107645.1:WP_092349638.1
          Length = 354

 Score =  373 bits (957), Expect = e-108
 Identities = 173/347 (49%), Positives = 248/347 (71%)

Query: 8   VELTSTKKPKPDPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYHYG 67
           + LT+ K+   D ++L+FGR ++D M +M+Y + KGW+  RI PY PLS+DPAAMV+HY 
Sbjct: 6   IPLTAPKEKYKDEDKLAFGRQYSDRMLIMEYDSGKGWHSARIQPYGPLSLDPAAMVFHYS 65

Query: 68  QTVFEGLKAYVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDKDW 127
           Q +FEG+K +   D  + +FRP  N+ R N+S +R+C+P++DE+  L+ + +L+ ++ DW
Sbjct: 66  QEIFEGMKVFRRADGTLSMFRPADNITRFNRSAERMCMPKVDEKFFLDAILKLIRMEADW 125

Query: 128 IPNAEGTSLYIRPFIIATEPFLGVAASHTYKLLIILSPVGSYYKEGIKPVKIAVESEFVR 187
           +P++EGTSLYIRP +IATEP LGV  ++ Y   +ILSPVG YYK GI PVKI +   +VR
Sbjct: 126 VPHSEGTSLYIRPTMIATEPMLGVRPANQYLCYVILSPVGPYYKGGIAPVKIWISDFYVR 185

Query: 188 AVKGGTGNAKTAGNYASSLKAQQVAEEKGFSQVLWLDGIEKKYIEEVGSMNIFFKINGEI 247
           A +GGTG AKT GNYA+SL A + A EKG+ QVLWLD  EK+++EEVGSMN+ F  +G+I
Sbjct: 186 ATEGGTGEAKTGGNYAASLYAAKEAAEKGYDQVLWLDAKEKRFVEEVGSMNMLFLYDGKI 245

Query: 248 VTPMLNGSILEGITRNSVIALLKHWGLQVSERKIAIDEVIQAHKDGILEEAFGTGTAAVI 307
           VT  L+G++L+GITR S + LLK  G +V ER +++DE+I+   +G L+EAFGTGTA VI
Sbjct: 246 VTSPLHGTVLDGITRRSALTLLKEMGYEVEERALSVDEIIEGANNGRLQEAFGTGTAVVI 305

Query: 308 SPVGELIWQDETLSINNGETGEIAKKLYDTITGIQKGAVADEFGWTT 354
           SPVG   ++D  + + +G+ G++  +LY  +T IQ G   D   W T
Sbjct: 306 SPVGSFCYKDTCVQLGDGQPGKLTMELYHKLTAIQYGKEPDNHNWVT 352


Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 403
Number of extensions: 17
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 354
Length adjustment: 29
Effective length of query: 334
Effective length of database: 325
Effective search space:   108550
Effective search space used:   108550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_092349638.1 BLU87_RS13210 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.12409.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12409.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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