Align glutamyl-tRNAGln amidotransferase subunit C (EC 6.3.5.7) (characterized)
to candidate WP_092481822.1 BM299_RS02200 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
Query= metacyc::MONOMER-13957
(96 letters)
>NCBI__GCF_900115975.1:WP_092481822.1
Length = 93
Score = 87.0 bits (214), Expect = 4e-23
Identities = 40/92 (43%), Positives = 62/92 (67%)
Query: 4 ISIEEVKHVAHLARLAITEEEAKMFTEQLDSIISFAEELNEVNTDNVEPTTHVLKMKNVM 63
+S +EV+HVA LARL +T+EE + + QL I+ +L +++T+N+ PT HVL ++NV
Sbjct: 2 LSPKEVEHVALLARLKLTDEEKETYRRQLSDILDNFRKLQDLDTENIPPTAHVLPLQNVF 61
Query: 64 REDEAGKGLPVEDVMKNAPDHKDGYIRVPSIL 95
RED G + VE V+ NAP +D + +VP I+
Sbjct: 62 REDRVGGHMAVEKVLANAPQRQDNFFKVPKIV 93
Lambda K H
0.312 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 93
Length adjustment: 10
Effective length of query: 86
Effective length of database: 83
Effective search space: 7138
Effective search space used: 7138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.5 bits)
S2: 39 (19.6 bits)
Align candidate WP_092481822.1 BM299_RS02200 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC)
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.23993.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23993.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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