Alignments for a candidate for gatB in Desulfoscipio geothermicus DSM 3669

Align glutamyl-tRNA^Gln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate WP_092481824.1 BM299_RS02210 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB

Query= metacyc::MONOMER-13956
         (476 letters)



>NCBI__GCF_900115975.1:WP_092481824.1
          Length = 480

 Score =  572 bits (1473), Expect = e-167
 Identities = 282/475 (59%), Positives = 366/475 (77%), Gaps = 4/475 (0%)

Query: 3   FETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAMKA 62
           +E VIGLEVHVELKT +KIF +S T FGA+ N     + LG PGVLPV+NK+ VE+A+KA
Sbjct: 4   YEAVIGLEVHVELKTNTKIFCNSSTEFGADPNHHVCPVCLGLPGVLPVINKKVVEYAIKA 63

Query: 63  AMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEVGGKTKRIGITRLH 122
            +ALNC+IA  +KFDRKNY+YPD PK YQISQ+D PI E+G +EI + G+TKRIGITR+H
Sbjct: 64  GLALNCKIAPFSKFDRKNYYYPDLPKNYQISQYDLPIAEHGQLEINLDGETKRIGITRVH 123

Query: 123 LEEDAGKLTHTGD----GYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEKLKSIIQYT 178
           +EEDAGKL H G      YSLVD+NR G PL+EIVSEPD+R+PEEA AYLEKLK+IIQYT
Sbjct: 124 MEEDAGKLVHQGTISTTPYSLVDYNRTGVPLIEIVSEPDMRSPEEAVAYLEKLKAIIQYT 183

Query: 179 GVSDCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSFAFVQKGLEHEEKRQEQVLLS 238
            VSDCKM+EGSLRCDANIS+RP+GQ EFGTKTELKN+NSF  + K + +E +RQ  VL  
Sbjct: 184 EVSDCKMQEGSLRCDANISVRPVGQVEFGTKTELKNMNSFKALHKAITYEIERQIDVLDE 243

Query: 239 GFFIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERVKASIPELPD 298
           G  + QETR +DE    T+ +R KE + DYRYFP+PDLV L I + W + ++AS+PELPD
Sbjct: 244 GGQVVQETRTWDEDKGVTLPLRSKEEAHDYRYFPDPDLVPLVISEAWVDEIRASLPELPD 303

Query: 299 ERRKRYIEELGFAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEVSAYLNAEQK 358
           ER+ R++ E G   YDA+VLT T+E+AD+FE+ V+     K  SNW+MG+++  +NA  +
Sbjct: 304 ERKARFVNEYGLPEYDALVLTSTRELADYFEQCVELFNNPKTVSNWVMGDLARMMNATGR 363

Query: 359 ELADVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKGLVQISDEGV 418
           E+  V + P  LA M+KL++KGTIS KIAK VF+E+   G D   IV+EKGLVQISDEG 
Sbjct: 364 EIGAVRIKPAQLAEMLKLLDKGTISGKIAKTVFEEMFNTGKDPGVIVEEKGLVQISDEGK 423

Query: 419 LLKLVTEALDNNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKILLEEI 473
           + K+V++ +  NP+S+ED++ GK +AIGFLVGQ+MKA+KG+ANP +VNK+L E++
Sbjct: 424 IEKIVSDVIAANPKSVEDYRGGKKQAIGFLVGQVMKATKGKANPGLVNKLLKEKL 478


Lambda     K      H
   0.314    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 724
Number of extensions: 29
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 480
Length adjustment: 34
Effective length of query: 442
Effective length of database: 446
Effective search space:   197132
Effective search space used:   197132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate WP_092481824.1 BM299_RS02210 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.25916.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25916.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.