Alignments for a candidate for asp-kinase in Desulfoscipio geothermicus DSM 3669

Align aspartate kinase 1; EC 2.7.2.4 (characterized)
to candidate WP_092482509.1 BM299_RS05755 aspartate kinase

Query= CharProtDB::CH_090816
         (404 letters)



>NCBI__GCF_900115975.1:WP_092482509.1
          Length = 408

 Score =  384 bits (987), Expect = e-111
 Identities = 206/408 (50%), Positives = 280/408 (68%), Gaps = 4/408 (0%)

Query: 1   MKIIVQKFGGTSVKDDKGRKLALGHIKEAISEGYKVVVVVSAMGRKGDPYATDSLLGLLY 60
           MK IV KFGGTS+   + R+   G I  A  EGY  VVVVSA+GR+GDPYATD+L+ L+ 
Sbjct: 1   MKYIVLKFGGTSLVSPELRERVAGKIIAAKDEGYVPVVVVSAIGREGDPYATDTLISLVK 60

Query: 61  GDQSAISPREQDLLLSCGETISSVVFTSMLLDNGVKAAALTGAQAGFLTNDQHTNAKIIE 120
                +  RE D+L+SCGE IS VV  + L   G  A  LTGAQAG +T+  ++ A+I++
Sbjct: 61  QTYHDLPAREMDMLMSCGEIISGVVMAATLQAMGYPAVFLTGAQAGIITDRNYSGARILQ 120

Query: 121 MKPERLFSVLANHDAVVVAGFQGATEKGDTTTIGRGGSDTSAAALGAAVDAEYIDIFTDV 180
           ++ + +         VVVAGFQG TE G+ TT+GRGGSDT+AAALG A++A Y+DI+TDV
Sbjct: 121 VQAKNVTRYTQEGYIVVVAGFQGTTEDGEITTLGRGGSDTTAAALGVALNAVYVDIYTDV 180

Query: 181 EGVMTADPRVVENAKPLPVVTYTEICNLAYQGAKVISPRAVEIAMQAKVPIRVRSTYSND 240
           +G+MTADPR+V  AK L V+TY EIC+LA++GAKV+ PRAVEIAMQ  +P+RVRST+S+ 
Sbjct: 181 DGIMTADPRIVAEAKALEVITYDEICHLAHEGAKVVHPRAVEIAMQKSIPLRVRSTFSDS 240

Query: 241 KGTLVTSHHSSKVGS-DVF-ERLITGIAHVKDVTQF--KVPAKIGQYNVQTEVFKAMANA 296
            GTLVT+      G+ D+  +R++TGI ++  + QF  ++ A       Q  +F+A+A A
Sbjct: 241 PGTLVTNSGEVYKGTIDITKDRIVTGITYISGIAQFIVRIGATGEGLKQQRRMFRALALA 300

Query: 297 GISVDFFNITPSEIVYTVAGNKTETAQRILMDMGYDPMVTRNCAKVSAVGAGIMGVPGVT 356
           GIS+DF NI P  +++TV  +  E A ++L + GY   V   CAKVSAVGAG+ GVPGV 
Sbjct: 301 GISIDFINILPEVVLFTVKDDVAEKAVKVLENTGYMSEVITGCAKVSAVGAGMSGVPGVI 360

Query: 357 SKIVSALSEKEIPILQSADSHTTIWVLVHEADMVPAVNALHEEFELSK 404
           + IV AL++ +I ILQ  DSHTT+WVLV   +M  AV ALH +F+L +
Sbjct: 361 ADIVEALTKDDIQILQCNDSHTTVWVLVRREEMEKAVRALHRQFKLDQ 408


Lambda     K      H
   0.316    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 496
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 408
Length adjustment: 31
Effective length of query: 373
Effective length of database: 377
Effective search space:   140621
Effective search space used:   140621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_092482509.1 BM299_RS05755 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.27807.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27807.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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