Alignments for a candidate for ilvC in Desulfoscipio geothermicus DSM 3669

Align Ketol-acid reductoisomerase (NAD(P)(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; Ketol-acid reductoisomerase type 1; Ketol-acid reductoisomerase type I; EC 1.1.1.383 (characterized)
to candidate WP_092483008.1 BM299_RS08295 ketol-acid reductoisomerase

Query= SwissProt::Q0AV19
         (337 letters)



>NCBI__GCF_900115975.1:WP_092483008.1
          Length = 331

 Score =  481 bits (1238), Expect = e-140
 Identities = 240/335 (71%), Positives = 278/335 (82%), Gaps = 5/335 (1%)

Query: 1   MARMFYDADANLENLKGKTIAVMGFGSQGHAQAQNLKESGLNVIVGLRKPFDEASEKEWN 60
           M ++FYD DA+L  LKGK IAVMGFGSQGHAQ+QNLKESGL+V+VGLRK  D AS   W 
Sbjct: 1   MVKVFYDQDADLAVLKGKKIAVMGFGSQGHAQSQNLKESGLDVVVGLRK--DSAS---WA 55

Query: 61  AVIAAGITPMSVAEAAEAADVIQILLPDEVQARVYNAEIKPYLKAGNALGFSHGFNIHFG 120
              AAG+   +VAEAA  AD+IQILLPDE QARVY  EI+PYL  G AL FSHGFNIHFG
Sbjct: 56  RAEAAGLQVATVAEAAGQADIIQILLPDEYQARVYKEEIEPYLTEGKALMFSHGFNIHFG 115

Query: 121 QIVPPAFVDVFMVAPKSPGHLVRRMYVKGAGVPGLVAVQQDYSGKAKDLALAYACGIGCT 180
           QIVPP  VDVF+VAPKSPGHLVRRMYV G GVPGLVAV QDY+G+A+D+ +AYA GIGCT
Sbjct: 116 QIVPPNNVDVFLVAPKSPGHLVRRMYVDGQGVPGLVAVHQDYTGRARDITMAYAKGIGCT 175

Query: 181 RAGVIETSFQEETETDLFGEQCVLCGGVTELVKAGFETLVEAGYQPEIAYFECMHELKLI 240
           RAGV ET+F EETETDLFGEQCVLCGGV+EL+KAGFETLVEAGY PE+AYFEC+HELKLI
Sbjct: 176 RAGVFETTFAEETETDLFGEQCVLCGGVSELIKAGFETLVEAGYAPEMAYFECLHELKLI 235

Query: 241 VDLMYEGGMSYMRYSISDTAEWGDYTKGPEIIGEEARYAMYEALQDIQDGSFAKGWLLEN 300
           VDL+ EGG+++MR+SIS+TAE+GDY  GP II E+ R  M   LQ+IQDG FAK W+LEN
Sbjct: 236 VDLINEGGLTWMRHSISNTAEYGDYITGPRIINEDTREEMRAVLQEIQDGVFAKEWILEN 295

Query: 301 MVGRPRFNALKRQNREHLIEEVGAELRGMMPWLKE 335
              RP +NA+K++ +EH IE+VGAELR MMPWLK+
Sbjct: 296 QANRPVYNAIKKREQEHPIEQVGAELRQMMPWLKK 330


Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 421
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 331
Length adjustment: 28
Effective length of query: 309
Effective length of database: 303
Effective search space:    93627
Effective search space used:    93627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_092483008.1 BM299_RS08295 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.6041.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6041.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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