Alignments for a candidate for DAPtransferase in Desulfoscipio geothermicus DSM 3669

Align LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 (characterized)
to candidate WP_092483207.1 BM299_RS08760 LL-diaminopimelate aminotransferase

Query= SwissProt::Q2RK33
         (390 letters)



>NCBI__GCF_900115975.1:WP_092483207.1
          Length = 392

 Score =  571 bits (1472), Expect = e-167
 Identities = 263/389 (67%), Positives = 329/389 (84%)

Query: 2   QEARRIRELPPYLFARIEKKIAEARERGVDIISLGIGDPDMPTPSHVIDKLVAEAHNPEN 61
           ++A+RI+ LPPYLFARIEK +AE +  GVDIISLGIGDPDMPTP H+I++L  +A  P N
Sbjct: 4   EQAQRIKNLPPYLFARIEKLVAEKKAAGVDIISLGIGDPDMPTPEHIIEELQKQAAVPVN 63

Query: 62  HRYPTSEGLLAFRQAVADWYQRLYGVDLDPRREVVTLIGSKEGIAHISLCYVDPGDINLV 121
           H+YP+S G+L+FRQAVADWY++  GV+LDP  EVV+LIGSKEGIAHIS CY++PGD  LV
Sbjct: 64  HQYPSSVGMLSFRQAVADWYRKRSGVELDPATEVVSLIGSKEGIAHISWCYLNPGDTVLV 123

Query: 122 PDPGYPVYNIGTLLAGGESYFMPLTAANGFLPDLGAIPSDVARRAKLMFINYPNNPTGAV 181
           PDPGYPVY+ G +LAG E Y+MPLTA N FLPDL AIP++VAR+AK+MFINYPNNPTGAV
Sbjct: 124 PDPGYPVYSGGAILAGAEPYYMPLTAENKFLPDLNAIPAEVARKAKMMFINYPNNPTGAV 183

Query: 182 ADLKFFQEVVEFARSYDLIVCHDAAYSEITYDGYRAPSFLQAPGAKEVGIEFNSVSKPYN 241
           A  +F+  V++FA+ Y+++VCHDAAY ++ +DGY+ PSFLQ PGAK+VGIEF SVSK YN
Sbjct: 184 AGEEFYLAVIDFAKEYNILVCHDAAYCDMAFDGYKPPSFLQFPGAKDVGIEFLSVSKTYN 243

Query: 242 MTGWRLGWACGRADVIEALARIKSNIDSGAFQAVQYAGIAALTGPQEGLAEVRRVYQERR 301
           MTGWR+GWA G   V++AL R+KSNIDSG FQA+QYA +  LTGPQ+ +  +++VY+ERR
Sbjct: 244 MTGWRIGWAAGHPGVVDALGRLKSNIDSGQFQAIQYAAMKGLTGPQDSVERMQKVYRERR 303

Query: 302 DIIVEGFNSLGWHLEKPKATFYVWAPVPRGYTSASFAEMVLEKAGVIITPGNGYGNYGEG 361
           DI+V+  NS+GW LEKPKATFYVWAPVP GYTSASFAEMVL+K GVIITPGNGYG  GEG
Sbjct: 304 DILVDALNSMGWQLEKPKATFYVWAPVPAGYTSASFAEMVLDKCGVIITPGNGYGENGEG 363

Query: 362 YFRIALTISKERMQEAIERLRRVLGKVEF 390
           +FRIALT+ K+RM EA++R+++ +G V+F
Sbjct: 364 FFRIALTVEKDRMMEALDRMKKNIGTVKF 392


Lambda     K      H
   0.320    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 577
Number of extensions: 17
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 392
Length adjustment: 31
Effective length of query: 359
Effective length of database: 361
Effective search space:   129599
Effective search space used:   129599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_092483207.1 BM299_RS08760 (LL-diaminopimelate aminotransferase)
to HMM TIGR03540 (LL-diaminopimelate aminotransferase (EC 2.6.1.83))

Software error:

../bin/blast/fastacmd -i /tmp/list.1632.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1632.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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