Alignments for a candidate for thrC in Desulfoscipio geothermicus DSM 3669

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_092485785.1 BM299_RS14365 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>NCBI__GCF_900115975.1:WP_092485785.1
          Length = 503

 Score =  287 bits (735), Expect = 5e-82
 Identities = 181/447 (40%), Positives = 252/447 (56%), Gaps = 33/447 (7%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVL- 59
           M Y STRG    L  + A+  G+A DGGL++P E   F+   I A+ G  Y + A  +L 
Sbjct: 1   MFYESTRGNYQPLPSAGAIKLGIAPDGGLFVPTEKVTFSMADISAMAGLGYQDRAAKILQ 60

Query: 60  ---TPFTGGEIPAADFERMVREAYG--TFRHDAVCPLVQTDANEFVLELFHGPTLAFKDV 114
              T FTG E+      R +  AY   +F H  V PLV  D    VLEL+HGPT AFKD+
Sbjct: 61  SFLTDFTGEELA-----RCINGAYNEISFDHPDVAPLVDLDEGLSVLELWHGPTCAFKDM 115

Query: 115 AMQLLARMMDYVLAQRGERA--TIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPV 172
           A+Q+L   +   + + GE A   I+ ATSGDTG AA+E F     T I + +P   VS V
Sbjct: 116 ALQILPHFLVQSMGKTGEDAGILILVATSGDTGKAALEGFKDVPRTAIVVFYPEEGVSEV 175

Query: 173 QQRQMTSSGFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDAL-----SLSGVNSINWARI 227
           Q+ QM +    NV  +++ GNFDD Q+ VK +F D    +         S  NSINW R+
Sbjct: 176 QRLQMVTQEGKNVGVVAVRGNFDDTQSGVKEIFGDPGMAETALKYGYKFSSANSINWGRL 235

Query: 228 MPQVVYYFTA--------ALSLGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIA 279
           +PQ+VYYF+A         L +G P   V+F VPTGNFG+I AG+ A++MGLP+ +LI A
Sbjct: 236 VPQIVYYFSAYADLLKRGRLKVGEP---VNFVVPTGNFGNILAGFYARQMGLPVNRLICA 292

Query: 280 TNDNDILSRTLESGAYEM-RGVAQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGL 338
            NDN++L+  + +G Y+  R   +T SPSMDI ISSN ERLLFE  G DA  VR  M  L
Sbjct: 293 ANDNNVLTDFIRTGIYDRNRAFKRTISPSMDILISSNLERLLFELTGHDAPRVRQWMADL 352

Query: 339 KQSGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAREKA 398
           K+ G + +       I+  F +  ++ +ET  +I+   ++  Y++D H+A+G+ V R+  
Sbjct: 353 KEHGRYEVDSTTRDMIQELFWSDFASDEETLVSIKQNYNQYKYVVDTHTAVGLHVYRKYR 412

Query: 399 SGTAP---MVVLATAHPAKFPDAVKAA 422
             T      +VL+TA P KF  +V  A
Sbjct: 413 ESTGDKFLTIVLSTASPFKFNASVTRA 439


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 514
Number of extensions: 25
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 503
Length adjustment: 34
Effective length of query: 429
Effective length of database: 469
Effective search space:   201201
Effective search space used:   201201
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_092485785.1 BM299_RS14365 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.31063.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31063.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.