Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_092991657.1 BLP65_RS00860 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_900102855.1:WP_092991657.1
Length = 1072
Score = 1550 bits (4012), Expect = 0.0
Identities = 774/1073 (72%), Positives = 902/1073 (84%), Gaps = 1/1073 (0%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTD+ SILI+GAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM
Sbjct: 1 MPKRTDLNSILIIGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATYIEPI W+ V +II+KERPDA+LPTMGGQTALNCAL+L R+GVLEE+GV MIGAT
Sbjct: 61 ADATYIEPITWQTVAEIIKKERPDALLPTMGGQTALNCALDLAREGVLEEYGVDMIGATR 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+AIDKAEDR +F AM+KIGL+ +S +AH+MEEAL V +GFP IIRPSFTMGGSGGG
Sbjct: 121 EAIDKAEDRDQFRQAMRKIGLDMPKSAMAHSMEEALQVQVQIGFPAIIRPSFTMGGSGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYN+EEF EIC RGLDLSPTKELLI+ES++GWKEYEMEVVRD DNCII+CSIENFD M
Sbjct: 181 IAYNKEEFVEICERGLDLSPTKELLIEESILGWKEYEMEVVRDHKDNCIIICSIENFDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTDKEYQIMR+AS+AVLREIGV+TGGSNVQF+VNP +GRLI+IEM
Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQIMRDASLAVLREIGVDTGGSNVQFSVNPDDGRLIIIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL N+ITGG TPASFEP+IDYVVTKIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELQNEITGGNTPASFEPAIDYVVTKIP 360
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
RF FEKF A++ LTTQMKSVGEVMAIGRT QESLQKA+RGLE G+ GF+ + D
Sbjct: 361 RFTFEKFPKADNTLTTQMKSVGEVMAIGRTFQESLQKAMRGLETGSDGFEAVFDVSDENV 420
Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
+R L+ A R+WY+ DAFRAG +++ V + ID WFLVQI+EL+ LE+ + E G
Sbjct: 421 TDDLRMALRKPTALRLWYVGDAFRAGFTLEEVHEFSRIDPWFLVQIQELIALEKTLHERG 480
Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540
+GL+ DFL +LKRKGF+D R+A L G+RE E+RK+R + + PVYKRVDTC+AEF+T T
Sbjct: 481 TSGLDRDFLFKLKRKGFSDRRMAFLLGIREGEMRKIRRELGVRPVYKRVDTCSAEFSTAT 540
Query: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600
AYMYSTYEEECEA PS DR KIMVLGGGPNRIGQGIEFDYCCVHA+ A++EDGYETIMVN
Sbjct: 541 AYMYSTYEEECEAQPS-DRNKIMVLGGGPNRIGQGIEFDYCCVHAAFAMKEDGYETIMVN 599
Query: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660
CNPETVSTDYDTSDRLYFEP+TLEDVLE++ +EKPKGVIVQYGGQTPLKLAR LEAAG P
Sbjct: 600 CNPETVSTDYDTSDRLYFEPLTLEDVLEVIDLEKPKGVIVQYGGQTPLKLARDLEAAGAP 659
Query: 661 VIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
+IGT+PD+ID AEDRERFQ +++L L+QP N T A E AV A+EIGYPLVVRPSYVL
Sbjct: 660 IIGTTPDSIDLAEDRERFQKMIDKLDLRQPPNRTARAAEDAVRLAEEIGYPLVVRPSYVL 719
Query: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780
GGRAMEIVY+EA+LR Y + AV VSN++PVLLD FLDDAVEVDVDA+CDGE V+IGGIME
Sbjct: 720 GGRAMEIVYNEAELRSYMRDAVKVSNESPVLLDRFLDDAVEVDVDAVCDGENVVIGGIME 779
Query: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840
HIEQAGVHSGDSACSLP Y LS E+QD +R Q +A EL+V GLMN QFA+K+N+VY++
Sbjct: 780 HIEQAGVHSGDSACSLPPYNLSAEVQDELRVQTAAMARELKVIGLMNTQFAIKDNDVYVL 839
Query: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF 900
EVNPRA+RTVP+VSKATG PLAK+AAR M G+SL QG+ +E++P YYSVKE V PF KF
Sbjct: 840 EVNPRASRTVPYVSKATGRPLAKIAARCMVGQSLPSQGIVEEIVPDYYSVKEAVFPFIKF 899
Query: 901 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960
PGVDP+LGPEM+STGEVMGVGR+F EA+AK+Q + + + GRA +SVR+ DK V +
Sbjct: 900 PGVDPILGPEMKSTGEVMGVGRSFGEAYAKSQCAAGIILPRTGRAFISVRDVDKRGTVPI 959
Query: 961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR 1020
A LL+ GFEL AT GTA L EAGI V KV E RPHI D IKN E ++I+NTT G+
Sbjct: 960 ARALLELGFELVATGGTAQHLREAGIECERVYKVTEDRPHIVDMIKNDEISFIVNTTEGK 1019
Query: 1021 RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK 1073
+AI DS +IRR ALQ+KV Y TTL G AT +A+ + +V +Q++H ++K
Sbjct: 1020 QAIADSYLIRREALQHKVTYTTTLAGASATCVAMKQRNSTEVTRLQDLHRELK 1072
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3244
Number of extensions: 139
Number of successful extensions: 13
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1072
Length adjustment: 45
Effective length of query: 1028
Effective length of database: 1027
Effective search space: 1055756
Effective search space used: 1055756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_092991657.1 BLP65_RS00860 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.1460.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1460.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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