Alignments for a candidate for argI in Thiohalomonas denitrificans HLD2

Align Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate WP_092994501.1 BLP65_RS06865 ornithine carbamoyltransferase

Query= SwissProt::P11724
         (305 letters)



>NCBI__GCF_900102855.1:WP_092994501.1
          Length = 300

 Score =  406 bits (1044), Expect = e-118
 Identities = 199/299 (66%), Positives = 235/299 (78%)

Query: 1   MSVRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSF 60
           M++RHFL+ +D+S +EL  LI R  ELK   N G   EP + R LGMVFEK+STRTR+SF
Sbjct: 1   MAIRHFLTLLDFSRDELNQLIARAIELKRTLNNGEHQEPFRGRTLGMVFEKSSTRTRVSF 60

Query: 61  EAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKV 120
           EA M Q GG AIFLSPRDTQLGRGEPI D+ARV+SRM+D VMIRTF H  L  FA  S+V
Sbjct: 61  EAAMAQCGGHAIFLSPRDTQLGRGEPIEDTARVLSRMVDVVMIRTFEHEKLERFAEFSRV 120

Query: 121 PVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRV 180
           PVIN L+D  HPCQLLAD+QTF E RGSI+G+TVAWIGDGNNMC+SYI AA +FDF+L +
Sbjct: 121 PVINALTDMYHPCQLLADVQTFVEQRGSIEGRTVAWIGDGNNMCHSYINAARQFDFKLNI 180

Query: 181 ACPEGYEPKAEFVALAGDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALFRPY 240
           ACPEGYEP +  ++ AGD   V+RDP EA  GAHLV+TDVWASMGQE+E   R  +F  Y
Sbjct: 181 ACPEGYEPDSAVLSAAGDTATVMRDPLEAAQGAHLVTTDVWASMGQEEEQKEREKVFADY 240

Query: 241 QVNAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLELLI 299
           +V   L++ AADD LFMHCLPAHRGEE+S E++D P+S+ WDQAENRLHAQKALLE LI
Sbjct: 241 EVTQTLMEAAADDSLFMHCLPAHRGEEVSAEVIDGPQSIVWDQAENRLHAQKALLEFLI 299


Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 311
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 300
Length adjustment: 27
Effective length of query: 278
Effective length of database: 273
Effective search space:    75894
Effective search space used:    75894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_092994501.1 BLP65_RS06865 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.3032.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3032.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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