Alignments for a candidate for leuA in Thermodesulforhabdus norvegica DSM 9990

Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate WP_093393182.1 BM091_RS02350 2-isopropylmalate synthase

Query= reanno::Btheta:351389
         (498 letters)



>NCBI__GCF_900114975.1:WP_093393182.1
          Length = 512

 Score =  523 bits (1347), Expect = e-153
 Identities = 267/500 (53%), Positives = 358/500 (71%), Gaps = 2/500 (0%)

Query: 1   MDNRLFIFDTTLRDGEQVPGCQLNTVEKIQVAKALEALGVDVIEAGFPISSPGDFNSVIE 60
           M  R++IFDTTLRDGEQVPG +LN  +K+++A+ L  LGVDVIEAGFP SSP D  +V  
Sbjct: 1   MARRIYIFDTTLRDGEQVPGAKLNKRQKLEIAEQLARLGVDVIEAGFPCSSPEDLQAVKA 60

Query: 61  ISKAVTWPTICALTRAVQKDIDVAVDALKFAKHKRIHTGIGTSDSHIKYKFNSNREEIIE 120
           I++ V  P I  L RAVQ+DID+A +A+K A+  RIH  +G+SD H++ K   +RE  ++
Sbjct: 61  IAEQVKGPVIAGLARAVQQDIDLAWEAVKPAERPRIHVFLGSSDIHLQKKLRRDRETALQ 120

Query: 121 RAVAAVKYARRFVDDVEFYAEDAGRTDNEYLARVVEAVIKAGATVVNIPDTTGYCLPSEY 180
           +AV +VKYA+R+  DVE+  EDA RTD +YL RVVEAVIKAGATVVNIPDT GY +P E+
Sbjct: 121 QAVDSVKYAKRYCQDVEYSTEDASRTDFDYLCRVVEAVIKAGATVVNIPDTVGYAIPDEF 180

Query: 181 GAKIKYLIDHVDGIDNAILSTHCHNDLGMATANTIAGVLNGARQVEVTINGIGERAGNTA 240
           G  IK L + V  +D   LS HCHNDLG+A ANT+A + NGA QVE TINGIGERAGN A
Sbjct: 181 GEMIKKLRERVPALDRVTLSVHCHNDLGLAVANTLAAIRNGADQVECTINGIGERAGNAA 240

Query: 241 LEEIAMIIKSHH-EIDIQTNINTQKIYPTSRMVSSLMNMPVQPNKAIVGRNAFAHSSGIH 299
           LEEI M +K      D  TNINT++IY TSRMVS +MN+PVQPNKAIVG NAFAHSSGIH
Sbjct: 241 LEEIVMALKVRQASFDAYTNINTKEIYRTSRMVSRIMNIPVQPNKAIVGSNAFAHSSGIH 300

Query: 300 QDGVLKNVETYEIIDPHDVGIDDNSIVLTARSGRAALKNRLSLLGVNLDQEKLDKVYEEF 359
           QDG+LK+  TYEII P DVGI D+ +VLTARSGRAAL+++L  LG +L +EK ++VY+ F
Sbjct: 301 QDGILKDRSTYEIIRPEDVGIKDHKLVLTARSGRAALRHQLQQLGFSLGEEKFERVYQRF 360

Query: 360 LKLADKKKDINDDDVLVLAGADRSQ-NHRIKLEYLQVTSGVGVRSVASLGLNISGEKFEA 418
           L +AD+KK+++ +D++ +   + ++         LQ+ SG  +  +AS+ L    EK   
Sbjct: 361 LNVADRKKEVSSEDLVTIVEIELTKVPETYTFHSLQIMSGNTITPMASVTLIKGEEKITE 420

Query: 419 CASGNGPVDAAIKALKKIVDRHMTLKEFTIQAISKGSDDVGKVHMQVEYDNQIYYGFGAN 478
            A GNGPVDA  K+++KIV +   L+++ ++A++ G+D +G+  ++VE D  IY G G +
Sbjct: 421 SALGNGPVDAVFKSIEKIVRKTAKLRDYDLKAVTTGTDALGEAMVRVEIDGMIYSGIGTS 480

Query: 479 TDIIAASVEAYIDCINKFKA 498
            D+I AS  AY++  N++ A
Sbjct: 481 PDVIEASARAYVNAFNRYFA 500


Lambda     K      H
   0.317    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 671
Number of extensions: 31
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 512
Length adjustment: 34
Effective length of query: 464
Effective length of database: 478
Effective search space:   221792
Effective search space used:   221792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_093393182.1 BM091_RS02350 (2-isopropylmalate synthase)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.8507.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8507.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.