Alignments for a candidate for asd in Thermodesulforhabdus norvegica DSM 9990

Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate WP_093393428.1 BM091_RS03255 aspartate-semialdehyde dehydrogenase

Query= metacyc::MONOMER-6564
         (346 letters)



>NCBI__GCF_900114975.1:WP_093393428.1
          Length = 341

 Score =  351 bits (901), Expect = e-101
 Identities = 178/343 (51%), Positives = 246/343 (71%), Gaps = 8/343 (2%)

Query: 4   GLHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPES 63
           G  VAVVGATGAVG  M++ LE+RNF + +L LL+S RSAG  ++F+G+E+ VQE + +S
Sbjct: 5   GFRVAVVGATGAVGNMMVRVLEERNFPVKSLKLLASARSAGKTLSFRGEEVPVQELTEDS 64

Query: 64  FEGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEHNG 123
           F  V+IALFSAG SVS+  AP A  +G +V+DN+SAFRMD + PLVVPEVN   L  H  
Sbjct: 65  FRDVDIALFSAGASVSRKFAPLAASQGCVVVDNSSAFRMDPDVPLVVPEVNPQALRNHKK 124

Query: 124 IIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEEI 183
           IIANPNCSTIQMV AL+P++ A G+ +++V+T+Q+VSG G +A+ EL  Q +  +  + +
Sbjct: 125 IIANPNCSTIQMVVALKPLQDAVGIKRIVVTTFQSVSGTGKKAIFELEQQVRGWVEGKAV 184

Query: 184 EPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAATCVR 243
            P + P       + IAFN +P I  F +NG++ EEMKM+NET+KI   PD+QV AT VR
Sbjct: 185 PPSVYP-------HPIAFNCLPHIGSFLENGFSEEEMKMVNETRKIFEDPDIQVCATTVR 237

Query: 244 LPIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKNDVFV 303
           +P+  GHSESV +E+ +   TVE+++ LL++APGV L D+P +  YP+P +A G+++ FV
Sbjct: 238 VPVFYGHSESVNVEL-KGLLTVEEVRRLLEKAPGVVLVDNPDRAEYPLPLNAEGRDETFV 296

Query: 304 GRIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAESLKKLNLV 346
           GRIRKD    NG  +W+V+DN+ KGAA N+VQIAE L K  L+
Sbjct: 297 GRIRKDPSVENGIVMWIVADNIRKGAATNAVQIAELLVKEGLL 339


Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 311
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 341
Length adjustment: 29
Effective length of query: 317
Effective length of database: 312
Effective search space:    98904
Effective search space used:    98904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate WP_093393428.1 BM091_RS03255 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.28544.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28544.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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