Alignments for a candidate for leuD in Thermodesulforhabdus norvegica DSM 9990

Align 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate WP_093393430.1 BM091_RS03265 3-isopropylmalate dehydratase small subunit

Query= BRENDA::Q58673
         (168 letters)



>NCBI__GCF_900114975.1:WP_093393430.1
          Length = 171

 Score =  212 bits (540), Expect = 2e-60
 Identities = 99/163 (60%), Positives = 126/163 (77%)

Query: 6   KGRVWKFGNNVDTDAILPARYLVYTKPEELAQFVMTGADPDFPKKVKPGDIIVGGKNFGC 65
           +GRVWKFGN++DTDAI+PARYL    P ELA   M  AD DF KKV+PGDIIV GKNFGC
Sbjct: 4   RGRVWKFGNDIDTDAIIPARYLNTHDPRELALHCMEDADADFAKKVQPGDIIVAGKNFGC 63

Query: 66  GSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECKGISEKVNEGDELEVNLE 125
           GSSREHAP+ +K AG+SCVIA SFARIFYRNA N+GLP++EC  + E V +G+ L V+L 
Sbjct: 64  GSSREHAPIAIKAAGVSCVIAASFARIFYRNAFNMGLPILECADLVEVVEDGEILSVDLS 123

Query: 126 TGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKKKMAESQ 168
           +GEI   +TG+  + Q +P FM E++EAGGL+PY+ +KM + +
Sbjct: 124 SGEIIRESTGQTFRAQPVPPFMQELIEAGGLIPYVVQKMKKEE 166


Lambda     K      H
   0.317    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 135
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 171
Length adjustment: 18
Effective length of query: 150
Effective length of database: 153
Effective search space:    22950
Effective search space used:    22950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)

Align candidate WP_093393430.1 BM091_RS03265 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR02087 (3-isopropylmalate dehydratase, small subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.16000.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16000.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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