Alignments for a candidate for leuC in Thermodesulforhabdus norvegica DSM 9990

Align isopropylmalate/citramalate isomerase large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (characterized)
to candidate WP_093393431.1 BM091_RS03270 3-isopropylmalate dehydratase large subunit

Query= reanno::DvH:208495
         (419 letters)



>NCBI__GCF_900114975.1:WP_093393431.1
          Length = 423

 Score =  494 bits (1273), Expect = e-144
 Identities = 247/413 (59%), Positives = 295/413 (71%)

Query: 4   TLAQKILQRHTDEAITDAGQIVRCRVSMVLANDITAPLAIKSFRAMGAKRVFDKDRVALV 63
           TL +KIL  H D     AGQIV  RV     NDITAP+AIK F+  G KRVFD  R+AL+
Sbjct: 5   TLVEKILSDHIDGGEARAGQIVEARVDFAFGNDITAPIAIKIFKEAGIKRVFDPYRIALI 64

Query: 64  MDHFTPQKDIEAAQQVKLTREFAREMGVTHYYEGGDCGVEHALLPELGLVGPGDVVVGAD 123
            DHFTP KDI++A QVK+ R+FARE G+ +Y+E G  GVEHALLPE GLV PG+V++GAD
Sbjct: 65  PDHFTPNKDIQSAMQVKILRDFAREQGLPYYFEVGRVGVEHALLPEEGLVLPGEVIIGAD 124

Query: 124 SHTCTYGGLGAFATGLGSTDVAGAMALGETWFKVPPTIRATFTGTLPAYVGAKDLILTLI 183
           SHTCTYG LGAFATG+GSTD+A AM  G+ WF+VP T++  F G L  +VG KDLIL  I
Sbjct: 125 SHTCTYGALGAFATGVGSTDLAAAMITGKVWFRVPETMKFVFRGKLRPWVGGKDLILFTI 184

Query: 184 GAIGVDGALYRALEFDGAAIEALDVEGRMTMANMAIEAGGKAGLFAADAKTLTYCTTAGR 243
           G IGVDGA YRA+EF G  I  L +  R ++ NMAIEAG K G+   D KT  Y     +
Sbjct: 185 GKIGVDGARYRAMEFTGEVISELSMADRFSLCNMAIEAGAKVGIIPPDEKTEEYIAPRAQ 244

Query: 244 TGDTAFSADAGAVYERELSFDVTGMTPVVACPHLPDNVKPVSEVKDVTVQQVVIGSCTNG 303
                + +D  AVYE    +DV+ + PVVA PHLP+NV+PV+E   V + QVVIGSCTNG
Sbjct: 245 RPYRFYQSDGDAVYEAVYEWDVSDLEPVVAFPHLPENVRPVTEANGVAIDQVVIGSCTNG 304

Query: 304 RIGDLREAAAVLRGRKVSRDVRCIVLPATPGIWRQALREGLIETFMEAGCIVGPATCGPC 363
           RI DLR AA +L+GRKV   VRC++ PATP ++RQAL EGL++ F EA  ++GP TCGPC
Sbjct: 305 RIEDLRIAAQILKGRKVHAGVRCLIFPATPSVYRQALEEGLLKIFAEAEAVIGPPTCGPC 364

Query: 364 LGGHMGILADGERAIATTNRNFKGRMGSLESEVYLSGPATAAASAVTGVITDP 416
           LGGHMGILA GERA+ATTNRNF GRMG  ESEVYL  PA AAASAV G I  P
Sbjct: 365 LGGHMGILAKGERALATTNRNFVGRMGHPESEVYLCNPAVAAASAVLGRIAHP 417


Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 564
Number of extensions: 20
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 423
Length adjustment: 32
Effective length of query: 387
Effective length of database: 391
Effective search space:   151317
Effective search space used:   151317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_093393431.1 BM091_RS03270 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR02083 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.21521.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21521.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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