Alignments for a candidate for prs in Thermodesulforhabdus norvegica DSM 9990

Align ribose-phosphate diphosphokinase (EC 2.7.6.1) (characterized)
to candidate WP_093394049.1 BM091_RS05385 ribose-phosphate pyrophosphokinase

Query= BRENDA::E7EAU9
         (317 letters)



>NCBI__GCF_900114975.1:WP_093394049.1
          Length = 317

 Score =  335 bits (858), Expect = 1e-96
 Identities = 167/308 (54%), Positives = 227/308 (73%), Gaps = 1/308 (0%)

Query: 10  LKIFSLNSNPELAKEIADNVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSAPV 69
           LKIF+ NSNPELA++I +N+ + LG+  V+ FSDGE+++ I+E++RG D +++QS + PV
Sbjct: 6   LKIFTGNSNPELARKICENLDIPLGRALVSTFSDGEIRVEIQENVRGADVFVVQSGAHPV 65

Query: 70  NEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATR 129
           N+H++ELL+M+DALKRASA+ I  V+PYY YARQDRK + R PITA+L A+L+  AGA R
Sbjct: 66  NDHLVELLVMIDALKRASARRITAVMPYYSYARQDRKNKPRVPITARLVADLISRAGADR 125

Query: 130 VIALDLHAPQIQGFFDIPIDHLMGVPILGHYFEGKDLKDIVIVSPDHGGVTRARKLADRL 189
           ++ +DLHA QIQGFFDIP+D+L   P+L  Y       D+VIVSPD GGV RAR  A RL
Sbjct: 126 ILTMDLHAGQIQGFFDIPVDNLYASPVLLPYIREHFDHDLVIVSPDAGGVPRARAYASRL 185

Query: 190 KAPIAIIDKRRPRPNEVEVMNIVGNVEGKTAILIDDIIDTAGTITLAANALVENGAAEVY 249
            A +A+IDKRR   N+ E MNI+G+V GKTAI++DD++DTAGT+  AA  L+E GA  V+
Sbjct: 186 NAGLALIDKRRADVNKAEAMNIIGDVAGKTAIILDDMVDTAGTLKEAAKTLIERGARSVH 245

Query: 250 ACCTHPVLSGPAVERINNSKIKELVVTNSIKL-PEEKKIERFKQLSVGPLLAEAIIRVHE 308
           AC TH VLSGPA+ERI  S I+ LVVT+++ L P+     + K +S   L +EAI  +H 
Sbjct: 246 ACVTHAVLSGPAIERIEESPIETLVVTDTLPLTPKAALCPKIKVVSASRLFSEAIRSIHN 305

Query: 309 KQSVSYLF 316
           + S+S LF
Sbjct: 306 EDSISSLF 313


Lambda     K      H
   0.319    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 257
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 317
Length adjustment: 27
Effective length of query: 290
Effective length of database: 290
Effective search space:    84100
Effective search space used:    84100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_093394049.1 BM091_RS05385 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.1917.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1917.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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