Alignments for a candidate for ilvD in Thermodesulforhabdus norvegica DSM 9990

Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate WP_093395105.1 BM091_RS08860 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-11919
         (549 letters)



>NCBI__GCF_900114975.1:WP_093395105.1
          Length = 557

 Score =  608 bits (1569), Expect = e-178
 Identities = 310/552 (56%), Positives = 407/552 (73%), Gaps = 5/552 (0%)

Query: 1   MKSDTIKRGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEG 60
           M+SD +K G+++APHRSL    G TD++ ++P IGI NS  +I+PGHIHL  +AEAVK G
Sbjct: 1   MRSDLMKSGLEKAPHRSLFKAMGYTDEELQRPLIGIVNSANEIIPGHIHLDRIAEAVKAG 60

Query: 61  VNAAGGVAFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCD 120
           V  AGG   EF  + +CDGIAMNH+GMKYSLASRE++AD+VE MA AH  DGLVL+P CD
Sbjct: 61  VRMAGGTPVEFPVIGVCDGIAMNHEGMKYSLASRELIADSVELMAKAHPFDGLVLIPNCD 120

Query: 121 KIVPGMLMAAARLDIPAIVVTGGPMLPGEFKGRKVDLINVYEGVGTVSAGEMSEDELEEL 180
           KI+PGMLMAA RL+IP+IVV+GGPML G    + VDLI+V+E VG+V AG+M  + L+EL
Sbjct: 121 KIIPGMLMAALRLNIPSIVVSGGPMLAGRLGSQPVDLISVFEAVGSVRAGKMDRETLKEL 180

Query: 181 ERCACPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQ 240
           E  ACPG  SCAG+FTAN+M CL EALG++LPG  T  AV + + ++A+ +G RIVE+V+
Sbjct: 181 EDEACPGCGSCAGMFTANSMNCLAEALGLALPGNGTIPAVHAARIRLAKYAGMRIVELVR 240

Query: 241 ENLKPTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEIDGLNINLDLFDELSRVIPH 300
           + + P  I+ +EAFENA+ VD+ALG STNT LH+PAIA E  G++I+L++F+++SR  PH
Sbjct: 241 KGIYPRDIVVKEAFENAIAVDMALGCSTNTVLHVPAIAHEA-GISIDLNIFNDISRKTPH 299

Query: 301 IASISPAGEHMMLDLDRAGGIPAVLKTLEDH--INRECVTCTGRTVQENIENVKVGHRDV 358
           + S+ P G H + DL RAGGIPAV+K L D   +NR+  T +G+TV E ++   V   +V
Sbjct: 300 LCSLRPGGPHFLEDLHRAGGIPAVMKVLADAGLVNRDLPTVSGKTVGEIVDAAAVRDSEV 359

Query: 359 IRPLDSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIFGG 418
           IRP++   H+EGG+A+L GNLAP G+VVKQ AVA +MM   G A+VF+SE E  +AI  G
Sbjct: 360 IRPVERAYHAEGGIAVLYGNLAPEGAVVKQSAVAPEMMKRTGRARVFDSEQEAAKAILDG 419

Query: 419 RIDEGDVIVIRYEGPKGGPGMREMLNPTSAIAGMGLER-VALITDGRFSGGTRGPCVGHV 477
            I  G+V+VIRYEGPKGGPGM+EML+PT+AI G GL++ VALITDGRFSGGTRG  +GHV
Sbjct: 420 VIQPGEVVVIRYEGPKGGPGMQEMLSPTAAIVGRGLDKDVALITDGRFSGGTRGAAIGHV 479

Query: 478 SPEAMEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEE-RLQSAVKPRRSVKGWLARYR 536
           SPEA   G +A V DGD I IDIP ++LE+ +    +E+ R++    P R   G+LARY 
Sbjct: 480 SPEAAAGGTIALVKDGDEILIDIPGKRLELLVDEGTLEKRRMEWTPPPPRITSGYLARYA 539

Query: 537 KLAGSADTGAVL 548
            +  S   GAVL
Sbjct: 540 AMVTSGARGAVL 551


Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1027
Number of extensions: 45
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 557
Length adjustment: 36
Effective length of query: 513
Effective length of database: 521
Effective search space:   267273
Effective search space used:   267273
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_093395105.1 BM091_RS08860 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.29667.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29667.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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