Alignments for a candidate for glnA in Thermodesulforhabdus norvegica DSM 9990

Align glutamine synthetase, type I (characterized)
to candidate WP_093395979.1 BM091_RS11670 type I glutamate--ammonia ligase

Query= metacyc::SYNPCC7942_2156-MONOMER
         (473 letters)



>NCBI__GCF_900114975.1:WP_093395979.1
          Length = 470

 Score =  647 bits (1670), Expect = 0.0
 Identities = 307/469 (65%), Positives = 373/469 (79%), Gaps = 1/469 (0%)

Query: 4   TAQEVLQLIQEKGIQLVDLKFIDMPGIWQHLTLHVSQIDENSFVEGVPFDGSSIRGWKAI 63
           T +EVL+  +EK +++VD KF+D PG+WQH ++ +S++ E+SF EG  FDGSSIRGW+ I
Sbjct: 2   TPKEVLEFAREKNVKMVDFKFLDFPGMWQHFSVPISELSESSFEEGFGFDGSSIRGWQPI 61

Query: 64  NESDMTMVPDPTTAWIDPFMKEPTLSMICTIYEPRTNTPYERCPRAIAQKAVDYLKASGI 123
           + SDM ++PDP TA IDPFM+ PTLS+IC + +P T   Y R PR IAQKA +YLK +GI
Sbjct: 62  HASDMLVIPDPDTAVIDPFMQVPTLSLICNVVDPITKEKYSRDPRYIAQKAEEYLKFTGI 121

Query: 124 GDTAYFGPEAEFFIFDDVRFDQAENKSYYYVDSIEGRWNSGREEEGGNLGYKPRYKEGYF 183
           GD AYFGPEAEFFIFDDVR+  A + +YY++DS EG WNSGREE   NLGYK R+KEGYF
Sbjct: 122 GDVAYFGPEAEFFIFDDVRYGDASHYAYYFLDSREGIWNSGREE-CPNLGYKLRHKEGYF 180

Query: 184 PVAPTDTSQDMRSEMLLTMADCGVPIEKHHHEVATGGQCELGFRFGKLIEAADWLMTYKY 243
           PV P+DT QD+R+EM+L M   G+ +E  HHEVAT GQ E+  RF  L++  D LM +KY
Sbjct: 181 PVPPSDTFQDIRTEMVLVMEQVGIQVECQHHEVATAGQAEIDMRFAPLVKMGDQLMWFKY 240

Query: 244 VIKNVGRRYGKTITFMPKPLFNDNGSGMHTHQSIWNDGQPLFAGDQYAGLSQMALWYIGG 303
           +IKNV RR+GKT+TFMPKPL+ DNGSGMHTH SIW DG+PLFAGD+YAGLS +ALW IGG
Sbjct: 241 IIKNVARRHGKTVTFMPKPLYGDNGSGMHTHTSIWKDGKPLFAGDKYAGLSDIALWAIGG 300

Query: 304 ILKHAPALLALTNPTTNSYKRLVPGFEAPVNLAYSQGNRSASVRIPLSGTNPKAKRLEFR 363
           ILKHA A+ A TNPTTNSYKRLVPG+EAPVNLAYS  NRSA++RIP+   +PKAKR+EFR
Sbjct: 301 ILKHARAICAFTNPTTNSYKRLVPGYEAPVNLAYSSRNRSAAIRIPMYSPSPKAKRIEFR 360

Query: 364 CPDATSNPYLAFAAMLCAGIDGIKNQIDPGEPLDVDIYDLSPEELAKIPSTPGSLKDALK 423
            PD + N YLAF+A+L A IDGI+N+IDPGEPLD DIY LSPEEL  +PSTPGSL +ALK
Sbjct: 361 TPDPSCNGYLAFSAILMAMIDGIENRIDPGEPLDKDIYALSPEELKDVPSTPGSLDEALK 420

Query: 424 ALEADHDFLTVGGVFTEDFIQNWIEYKLDNEVIPISLRPHPYEFALYYD 472
           ALE DH+FL  GGVFTED I+ WI YK   EV P+ LRPHP+EF LY+D
Sbjct: 421 ALEEDHEFLMKGGVFTEDVIEEWISYKRTREVDPVRLRPHPHEFYLYFD 469


Lambda     K      H
   0.319    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 791
Number of extensions: 26
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 470
Length adjustment: 33
Effective length of query: 440
Effective length of database: 437
Effective search space:   192280
Effective search space used:   192280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_093395979.1 BM091_RS11670 (type I glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.17003.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17003.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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